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Dear Experts,
I’m encountering a problem when running the preproc-sess on my functional data. When using the flag -surface subject hemi i am getting ":ERROR: source volume is neither source nor target of the registration”. The source is a template.nii file present in the bold folders, while the destination file is the mri/orig.mgz from the “subject” folder (after Longitudinal recon-all).
I am not sure if the problem could be connected with the mc-sess,stc-sess or topup (where i need to crop out 1 slice to get an even volume) steps, that i’m running before preproc-sess, or if i’m missing an extra flag.
Here the command i’m running: preproc-sess -s f10_sess01new -fsd bold -i my_hifi_images -nostc -nomc -surface hum_15721.long.long010 lhrh -mni305 -fwhm 4 -per-run
Many thanks for your time and support, Best Regards
Giorgio
This means that the source or target of the registration is not the same as what is in the registration file. Did the subject folder change? You can always delete the registration and rerun, and it will register to the new target
On 4/9/2021 10:58 AM, Manenti, Giorgio wrote:
External Email - Use CautionDear Experts,
I’m encountering a problem when running the preproc-sess on my functional data. When using the flag -surface subject hemi i am getting ":ERROR: source volume is neither source nor target of the registration”. The source is a template.nii file present in the bold folders, while the destination file is the mri/orig.mgz from the “subject” folder (after Longitudinal recon-all).
I am not sure if the problem could be connected with the mc-sess,stc-sess or topup (where i need to crop out 1 slice to get an even volume) steps, that i’m running before preproc-sess, or if i’m missing an extra flag.
Here the command i’m running: preproc-sess -s f10_sess01new -fsd bold -i my_hifi_images -nostc -nomc -surface hum_15721.long.long010 lhrh -mni305 -fwhm 4 -per-run
Many thanks for your time and support, Best Regards
Giorgio
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