External Email - Use Caution

Thanks, Eugenio. I'm sure that list is quite long. ;)

________________________________ From: Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Wednesday, February 4, 2026 11:18 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Re: SuperSynth equivalent of quantifyHAsubregions.sh

Thanks for the interest in our work, Donna. SuperSynth writes a CSV per case but we haven’t put anything together to crawl a directory and concatenate. It should be straightforward in Matlab or Python, though. Either way: duly noted! I’ll add this to my to-do list (spoiler alert: the list is pretty big…) Best wishes, /Eugenio

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Juan Eugenio Iglesias

http://secure-web.cisco.com/13OQroIeZwyvphJjD6hz-TQgHKdCSZwEuo6j4e30bZ6DRFNf...

From: Dierker, Donna donna@wustl.edu Date: Wednesday, February 4, 2026 at 12:12 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Fw: SuperSynth equivalent of quantifyHAsubregions.sh

External Email - Use Caution I don't think this message made it to the list.

________________________________ From: Dierker, Donna Sent: Wednesday, January 21, 2026 10:14 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: SuperSynth equivalent of quantifyHAsubregions.sh

Hi Dr. Iglesias,

We tried SuperSynth (development version downloaded 11/7/2025) on several subjects, and it worked very well. It took 12 minutes per subject (though we still needed to run Freesurfer 8 for the cortical parcels — this took longer). The PI will use the extra-cerebral regions for her study, though it will be a while before we have a paper to cite you.

I wondered, though, whether there was a counterpart to quantifyHAsubregions.sh for SuperSynth (i.e., extract stats into NumSubjects x NumParcels spreadsheet)?

Thanks for the great tools,

Donna

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