Hi Xiang-zhen, mri_glmfit does not read the FSF_OUTPUT_FORMAT. Instead, control the output format with --nii.gz doug

On 04/12/2013 07:58 AM, Xiangzhen Kong wrote:

Hi, all. I have come across a problem when using mri_glmfit. We know that the output format is controlled by the $FSF_OUTPUT_FORMAT. I have checked that in my environment, $FSF_OUTPUT_FORMAT is nii.gz. But the output fils are all in mgh format. How can I get output files in nii.gz? Thanks! Xiang-zhen

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