Thank you very much for you kindness Anastasia. The folder that contains .nii.gz file is correct?I'm looking the recommended trac-all update. Where can I put it? Stefano
----Messaggio originale---- Da: ayendiki@nmr.mgh.harvard.edu Data: 28-gen-2013 16.45 A: stdp82@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] R: R: Re: TRACULA
Hi Stefano - The argument of the -c option is a configuration file, not a directory. For more info on trac-all and setting up the configuration file, please see the trac-all wiki page: http://www.freesurfer.net/fswiki/trac-all and tracula tutorials: http://www.freesurfer.net/fswiki/FsTutorial/Tracula
a.y
On Mon, 28 Jan 2013, stdp82@virgilio.it wrote:
Hi and thank you very much for your availability. Now, I'm running tracula as following:
trac-all -prep -c /Applications/freesurfer/subjects/subject_prova/CON_01
my CON_01 forder contains: data.nii.gz (DWI), bvals and bvecs (as used in
previous FSL analysis) and T1-images.nii.gz. File.niii.gz are the same
that I have previously used in FSL analysis.
Please, my questions are: a- Are correct the command and the files (dyrectory positioning and their extensions)? b- Now my computer seem to running but after 1 h from the start, I visualize on my desktop this message "Your Mac 0SX has no more space available for application memory". My pc is a iMAC OS X Mountain Lion. 2.7 GHz Intel Core i5; 8GB 1600 MHz DDR3; NVIDIA GeForce DT640M 512 MB; 762,42 GB are free on a total of 999,35 I have download the package for (Snow)Leopard (10.5/6.x) Intel.
Thanks,
Stefano
----Messaggio originale---- Da: ayendiki@nmr.mgh.harvard.edu Data: 27-gen-2013 19.36 A: stdp82@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] TRACULA
Hi Stefano - The -prep option doesn't take an argument. Please run trac-all with no arguments to see usage info.
a.y
Hi list, I'm trying to run a test subject with TRACULA. I placed a folder in /Applications/freesurfer/subject/subject_prova which contains these files: data.nii.gz (DWI), bvals and bvecs (as used in previous FSL analysis) and T1-images.in /Applications/freesurfer/subject/subject_prova This is the command that I'm running:[iMac-di-Stefano:~] Stefano% trac-all -prep $FREESURFER_HOME/subjects/subject_prova/CON_01 --i $FREESURFER_HOME/subjects/subject_prova ERROR: flag /Applications/freesurfer/subjects/subject_prova/CON_01unrecognized-prep /Applications/freesurfer/subjects/subject_prova/CON_01 --i /Applications/freesurfer/subjects/subject_prova Please, give me an help.
Thanks in advance,
Stefano _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Stefano - Type "which trac-all" to find out where trac-all lives on your computer, then copy the updated version over it.
a.y
On Mon, 28 Jan 2013, stdp82@virgilio.it wrote:
Thank you very much for you kindness Anastasia. The folder that contains .nii.gz file is correct? I'm looking the recommended trac-all update. Where can I put it?
Stefano
----Messaggio originale---- Da: ayendiki@nmr.mgh.harvard.edu Data: 28-gen-2013 16.45 A: stdp82@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] R: R: Re: TRACULA
Hi Stefano - The argument of the -c option is a configuration file, not a directory. For more info on trac-all and setting up the configuration file, please see the trac-all wiki page: http://www.freesurfer.net/fswiki/trac-all and tracula tutorials: http://www.freesurfer.net/fswiki/FsTutorial/Tracula
a.y
On Mon, 28 Jan 2013, stdp82@virgilio.it wrote:
Hi and thank you very much for your availability. Now, I'm running tracula as following:
trac-all -prep -c /Applications/freesurfer/subjects/subject_prova/CON_01
my CON_01 forder contains: data.nii.gz (DWI), bvals and bvecs (as used in
previous FSL analysis) and T1-images.nii.gz. File.niii.gz are the same
that I have previously used in FSL analysis.
Please, my questions are: a- Are correct the command and the files (dyrectory positioning and their extensions)? b- Now my computer seem to running but after 1 h from the start, I
visualize
on my desktop this message "Your Mac 0SX has no more space available for application memory". My pc is a iMAC OS X Mountain Lion. 2.7 GHz Intel Core i5; 8GB 1600 MHz DDR3; NVIDIA GeForce DT640M 512 MB; 762,42 GB are free on a total of
999,35
I have download the package for (Snow)Leopard (10.5/6.x) Intel.
Thanks,
Stefano
----Messaggio originale---- Da: ayendiki@nmr.mgh.harvard.edu Data: 27-gen-2013 19.36 A: stdp82@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] TRACULA
Hi Stefano - The -prep option doesn't take an argument. Please run trac-all with no arguments to see usage info.
a.y
Hi list, I'm trying to run a test subject with TRACULA. I placed a folder in /Applications/freesurfer/subject/subject_prova
which
contains these files: data.nii.gz (DWI), bvals and bvecs (as used in previous FSL analysis) and T1-images.in /Applications/freesurfer/subject/subject_prova This is the command that I'm running:[iMac-di-Stefano:~] Stefano%
trac-all
-prep $FREESURFER_HOME/subjects/subject_prova/CON_01 --i $FREESURFER_HOME/subjects/subject_prova ERROR: flag /Applications/freesurfer/subjects/subject_prova/CON_01unrecognized-prep /Applications/freesurfer/subjects/subject_prova/CON_01 --i /Applications/freesurfer/subjects/subject_prova Please, give me an help.
Thanks in advance,
Stefano _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it
is
addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Anastasia Yendiki -
stdp82＠virgilio.it