Hi, I'm on thigpen and I ran
source /usr/local/freesurfer/nmr-std-env setenv SUBJECTS_DIR /space/thigpen/8/users/akram/ADNI_processing tkregister2 --mgz --s 023_S_0030 --fstal
but no volume will load. Any suggestions? Thanks! Akram.
There does not appear to be a talairach.xfm file there. Did you just delete/move it? It looks like this data was collected way off from the magnet isocenter, and this may be causing it to be offset too far in the tkregister FoV. I've seen this type of thing before, but never quite so extreme.
Akram Bakkour wrote:
Hi, I'm on thigpen and I ran
source /usr/local/freesurfer/nmr-std-env setenv SUBJECTS_DIR /space/thigpen/8/users/akram/ADNI_processing tkregister2 --mgz --s 023_S_0030 --fstal
but no volume will load. Any suggestions? Thanks! Akram.
freesurfer@nmr.mgh.harvard.edu