Bruce,
I worked my way backwards through the stream on each .mgz file. The aseg.mgz (and aseg.auto.mgz) file came up in pieces, some parts were there, others weren't; brain.mgz was blank, there was nothing there, as well as the values being 0; the same for norm.mgz. However, both brainmask & nu.mgz appeared normal, which makes me suspect the talairach.lta file. Is this bad output because of the talairach registration?
-Derin
Hi Derin,
yes, frequently that is the case. What does the T1.mgz look like? And look at the talairach.xfm (not .lta) and see if it looks reasonable.
Bruce On Wed, 6 Sep 2006, Derin Cobia wrote:
Bruce,
I worked my way backwards through the stream on each .mgz file. The aseg.mgz (and aseg.auto.mgz) file came up in pieces, some parts were there, others weren't; brain.mgz was blank, there was nothing there, as well as the values being 0; the same for norm.mgz. However, both brainmask & nu.mgz appeared normal, which makes me suspect the talairach.lta file. Is this bad output because of the talairach registration?
-Derin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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-
Bruce Fischl -
Derin Cobia