here is one way

mri_cor2label --i aparc+aseg.mgz --id 10 --l left-thal.label mri_label2label --srclabel ./left-thal.label --srcsubject subject --trgsubject talairach --regmethod volume --trglabel left-thal.mni305.label

There will be an entry for each voxel in the label. The corrdinates in left-thal.mni305.label will be in mni305 space.

doug

On 11/06/2015 09:11 AM, André Schmidt wrote:

Dear FS experts,

I would like to know the MNI coordinates of my ROIs obtained from recon-all (aparc+aseg.mgz file). For example what for coordinates has number 10 (left thalamus)? Are the coordinates of each region listed somewhere?

Many thanks for your help

Best wishes André

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