Please post questions to the list. Thanks! You need fsaverage. What are you trying to do? Usually people point SUBJECTS_DIR to a folder in space where they have write permission, then create a symlink from fsaverage to that space. Can you not do this? doug
On 2/25/14 10:04 AM, Boadu, Osei B wrote:
Apparently I don't. Is there another way to get fsaverage? ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, February 24, 2014 6:39 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FsAverage
Do you have write permission into that folder?
On 02/24/2014 05:28 PM, Boadu, Osei B wrote:
Hello,
When trying to either create a symbolic link or copy the fsaverage folder, I am told that permission has been denied. E.g.: ln -s $FREESURFER_HOME/subjects/fsaverage fsaverage ln: creating symbolic link `fsaverage/fsaverage': Permission denied
I'm not sure what I should do.
Thanks, Osei
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Sorry, I thought I replied all. I'm trying to do MNE analysis on some subjects without MRIs. I was able to make the symlink but now I can't copy the fsaverage file from $MNE_ROOT because of denied permissions. I thought I needed to this because it has the -trans file among others. ________________________________________ From: Douglas Greve [greve@nmr.mgh.harvard.edu] Sent: Tuesday, February 25, 2014 10:48 AM To: Boadu, Osei B; free surfer Subject: Re: [Freesurfer] FsAverage
Please post questions to the list. Thanks! You need fsaverage. What are you trying to do? Usually people point SUBJECTS_DIR to a folder in space where they have write permission, then create a symlink from fsaverage to that space. Can you not do this? doug
On 2/25/14 10:04 AM, Boadu, Osei B wrote:
Apparently I don't. Is there another way to get fsaverage? ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, February 24, 2014 6:39 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FsAverage
Do you have write permission into that folder?
On 02/24/2014 05:28 PM, Boadu, Osei B wrote:
Hello,
When trying to either create a symbolic link or copy the fsaverage folder, I am told that permission has been denied. E.g.: ln -s $FREESURFER_HOME/subjects/fsaverage fsaverage ln: creating symbolic link `fsaverage/fsaverage': Permission denied
I'm not sure what I should do.
Thanks, Osei
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
but fsaverage should already exist in
$FREESURFER_HOME/subjects/fsaverage
does it not?
On 02/25/2014 11:15 AM, Boadu, Osei B wrote:
Sorry, I thought I replied all. I'm trying to do MNE analysis on some subjects without MRIs. I was able to make the symlink but now I can't copy the fsaverage file from $MNE_ROOT because of denied permissions. I thought I needed to this because it has the -trans file among others. ________________________________________ From: Douglas Greve [greve@nmr.mgh.harvard.edu] Sent: Tuesday, February 25, 2014 10:48 AM To: Boadu, Osei B; free surfer Subject: Re: [Freesurfer] FsAverage
Please post questions to the list. Thanks! You need fsaverage. What are you trying to do? Usually people point SUBJECTS_DIR to a folder in space where they have write permission, then create a symlink from fsaverage to that space. Can you not do this? doug
On 2/25/14 10:04 AM, Boadu, Osei B wrote:
Apparently I don't. Is there another way to get fsaverage? ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, February 24, 2014 6:39 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FsAverage
Do you have write permission into that folder?
On 02/24/2014 05:28 PM, Boadu, Osei B wrote:
Hello,
When trying to either create a symbolic link or copy the fsaverage folder, I am told that permission has been denied. E.g.: ln -s $FREESURFER_HOME/subjects/fsaverage fsaverage ln: creating symbolic link `fsaverage/fsaverage': Permission denied
I'm not sure what I should do.
Thanks, Osei
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
the folders within $FREESURFER_HOME/subjects/fsaverage are: label, mri, mri.2mm, scripts, and surf. ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Tuesday, February 25, 2014 11:28 AM To: Boadu, Osei B; free surfer Subject: Re: [Freesurfer] FsAverage
but fsaverage should already exist in
$FREESURFER_HOME/subjects/fsaverage
does it not?
On 02/25/2014 11:15 AM, Boadu, Osei B wrote:
Sorry, I thought I replied all. I'm trying to do MNE analysis on some subjects without MRIs. I was able to make the symlink but now I can't copy the fsaverage file from $MNE_ROOT because of denied permissions. I thought I needed to this because it has the -trans file among others. ________________________________________ From: Douglas Greve [greve@nmr.mgh.harvard.edu] Sent: Tuesday, February 25, 2014 10:48 AM To: Boadu, Osei B; free surfer Subject: Re: [Freesurfer] FsAverage
Please post questions to the list. Thanks! You need fsaverage. What are you trying to do? Usually people point SUBJECTS_DIR to a folder in space where they have write permission, then create a symlink from fsaverage to that space. Can you not do this? doug
On 2/25/14 10:04 AM, Boadu, Osei B wrote:
Apparently I don't. Is there another way to get fsaverage? ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, February 24, 2014 6:39 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FsAverage
Do you have write permission into that folder?
On 02/24/2014 05:28 PM, Boadu, Osei B wrote:
Hello,
When trying to either create a symbolic link or copy the fsaverage folder, I am told that permission has been denied. E.g.: ln -s $FREESURFER_HOME/subjects/fsaverage fsaverage ln: creating symbolic link `fsaverage/fsaverage': Permission denied
I'm not sure what I should do.
Thanks, Osei
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Boadu, Osei B -
Douglas Greve -
Douglas N Greve