hmm, not sure what's going on here as your orig is newer than your inflated, which it shouldn't be:

ls -lrt rh.* -rw-rw-r-- 1 nandita nandita 3202384 Jun 29 15:53 rh.orig.nofix -rw-rw-r-- 1 nandita nandita 3202704 Jun 29 15:53 rh.smoothwm.nofix -rw-rw-r-- 1 nandita nandita 3203048 Jun 29 15:57 rh.inflated.nofix -rw-rw-r-- 1 nandita nandita 3203374 Jun 29 16:29 rh.qsphere.nofix -rw-rw-r-- 1 nandita nandita 3203048 Jun 29 16:29 rh.inflated -rw-rw-r-- 1 nandita nandita 533415 Jun 29 16:30 rh.defect_labels -rw-rw-r-- 1 nandita nandita 533415 Jun 29 16:30 rh.defect_chull -rw-rw-r-- 1 nandita nandita 533415 Jun 29 16:30 rh.defect_borders -rw-rw-r-- 1 nandita nandita 4717916 Jun 29 19:39 rh.orig -rw-rw-r-- 1 nandita nandita 3203358 Jul 5 17:49 rh.sphere

try reprocessing it with -all (instead of -autorecon1, etc..) from the beginning, as that's the recommended processing stream now (since it rarely fails on reasonable data)

Bruce

On Fri, 7 Jul 2006, Nandita Shetty wrote:

Hi, I came across an error in the third stage of reconstruction using freesurfer. The images,scripts etc are at

space/megraid/42/ACE/PILOTDATA/DATA_PROCESS

The recon log says that recon-all exited with errors and stopped at Surf Reg rh. I am a new user and was hoping that you could help me out with the same. Also, I do know that the inflated brain is not ideal but nevertheless wanted to complete the reconstruction to get a feel of it. This is what the error log says MRISreadVertexPosition(smoothwm): could not open file ../surf/rh.smoothwm MRISreadOriginalProperties: could not read surface file smoo

Thanks in advance for any help in this regard. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer