Can you send the recon-all.log file? I can examine it for error messages.

Also, do the input files contain orientation info? run this on your subject input volume:

mri_info 001.mgz

and send me the output.

On Mon, 2006-07-17 at 13:58 -0700, Jake Freimer wrote:

I have run several instances of autorecon2 and have only got left hemisphere data. The log file says that autorecon finished with errors but I can not find where to find these errors. I believe that the problem is the way the data being fed in is oriented so I was wondering how I should reorient it to get it to work. Thanks Jake _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer