Hi Doug,
Still no luck getting the script- the site does not load for some reason. Any chance you might be able to paste it into the message body?
Thanks, - Arkadiy
On Sun, Jun 19, 2016 at 12:00 PM, freesurfer-request@nmr.mgh.harvard.edu wrote:
Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu
To subscribe or unsubscribe via the World Wide Web, visit https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edu
You can reach the person managing the list at freesurfer-owner@nmr.mgh.harvard.edu
When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..."
Today's Topics:
- Re: GLM_Fit Question (Douglas Greve)
- Using Freesurfer commands in matlab (HARI GURAGAIN)
- change the algorithm (N Saf)
- Re: change the algorithm (Bruce Fischl)
- Re: registering to fsaverage (Trisanna Sprung-Much)
- Re: registering to fsaverage (Bruce Fischl)
Message: 1 Date: Sat, 18 Jun 2016 23:54:18 +0200 From: Douglas Greve greve@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] GLM_Fit Question To: freesurfer@nmr.mgh.harvard.edu Message-ID: 5765C30A.5080604@nmr.mgh.harvard.edu Content-Type: text/plain; charset="windows-1252"
try now
On 6/16/16 11:50 PM, Arkadiy Maksimovskiy wrote:
Hi Freesurfers,
I am having a similar problem with the FSGD file as the user indicated at this thread:
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg40599.html
I am trying to access the script that Doug wrote in order to fix it, however, the link to download the script does not seem to be working. I was wondering if someone might be able to upload it again.
Thank you in advance for your help,
Arkadiy
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Arkadiy
Doug is on vacation and his response time is likely to be slow. Can you tell us exactly what script you mean?
cheers Bruce
On Sun, 19 Jun 2016, Arkadiy Maksimovskiy wrote:
Hi Doug, Still no luck getting the script- the site does not load for some reason. Any chance you might be able to paste it into the message body?
Thanks,
- Arkadiy
On Sun, Jun 19, 2016 at 12:00 PM, freesurfer-request@nmr.mgh.harvard.edu wrote: Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu
To subscribe or unsubscribe via the World Wide Web, visit https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edu You can reach the person managing the list at freesurfer-owner@nmr.mgh.harvard.edu When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..." Today's Topics: 1. Re: GLM_Fit Question (Douglas Greve) 2. Using Freesurfer commands in matlab (HARI GURAGAIN) 3. change the algorithm (N Saf) 4. Re: change the algorithm (Bruce Fischl) 5. Re: registering to fsaverage (Trisanna Sprung-Much) 6. Re: registering to fsaverage (Bruce Fischl) ---------------------------------------------------------------------- Message: 1 Date: Sat, 18 Jun 2016 23:54:18 +0200 From: Douglas Greve <greve@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] GLM_Fit Question To: freesurfer@nmr.mgh.harvard.edu Message-ID: <5765C30A.5080604@nmr.mgh.harvard.edu> Content-Type: text/plain; charset="windows-1252" try now On 6/16/16 11:50 PM, Arkadiy Maksimovskiy wrote: > Hi Freesurfers, > > I am having a similar problem with the FSGD file as the user indicated > at this thread: > > https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg40599.html > > I am trying to access the script that Doug wrote in order to fix it, > however, the link to download the script does not seem to be working. > I was wondering if someone might be able to upload it again. > > Thank you in advance for your help, > > Arkadiy > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I can see it so I don't know what the problem is. The script is short, so I've just copied it below.
#!/usr/bin/python # This script replaces carriage returns with line feeds # Usage: rmcr inputfile > outputfile > # $Id: rmcr,v 1.1 2015/03/24 21:56:02 greve Exp $ import sys; import fileinput; sys.stdout.writelines(line.replace('\r', '\n') for line in fileinput.input(mode='rU'))
On 6/20/16 3:25 PM, Bruce Fischl wrote:
Hi Arkadiy
Doug is on vacation and his response time is likely to be slow. Can you tell us exactly what script you mean?
cheers Bruce
On Sun, 19 Jun 2016, Arkadiy Maksimovskiy wrote:
Hi Doug, Still no luck getting the script- the site does not load for some reason. Any chance you might be able to paste it into the message body?
Thanks,
- Arkadiy
On Sun, Jun 19, 2016 at 12:00 PM, freesurfer-request@nmr.mgh.harvard.edu wrote: Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu
To subscribe or unsubscribe via the World Wide Web, visithttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edu
You can reach the person managing the list at freesurfer-owner@nmr.mgh.harvard.edu When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..." Today's Topics: 1. Re: GLM_Fit Question (Douglas Greve) 2. Using Freesurfer commands in matlab (HARI GURAGAIN) 3. change the algorithm (N Saf) 4. Re: change the algorithm (Bruce Fischl) 5. Re: registering to fsaverage (Trisanna Sprung-Much) 6. Re: registering to fsaverage (Bruce Fischl)
Message: 1 Date: Sat, 18 Jun 2016 23:54:18 +0200 From: Douglas Greve <greve@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] GLM_Fit Question To: freesurfer@nmr.mgh.harvard.edu Message-ID: <5765C30A.5080604@nmr.mgh.harvard.edu> Content-Type: text/plain; charset="windows-1252" try now On 6/16/16 11:50 PM, Arkadiy Maksimovskiy wrote: > Hi Freesurfers, > > I am having a similar problem with the FSGD file as the user indicated > at this thread: > >https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg40599.html > > I am trying to access the script that Doug wrote in order to fix it, > however, the link to download the script does not seem to be working. > I was wondering if someone might be able to upload it again. > > Thank you in advance for your help, > > Arkadiy > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu