'bugr'

is the command to type to gather most of the info we need to debug a problem. the 'recon-all.log' file is the biggest help.

if you want to just try rerunning, then try:

recon-all -s <subjid> -make all

Nick

On Mon, 2009-07-27 at 04:12 +0200, Michael Scheel wrote:

Hi freesurfer-experts,

I was running the recon-all script and did get some errors due to a missing vtk and x-windows libraries. The output that was created seems fine though, just some files are missing. I was wondering if there is way to rerun the analysis, but only the parts that exited with error?

these programs exited with error mris_volmask mri_aparc2aseg (several times with different options) and a final mri_segstats

Thanks, Michael _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer