Thank you for the help Bruce. I really appreciate it! So if we have a custom made label to we need to somehow add it to the FreeSurferColorLUT.txt.
mris_convert --label lh.cluster1.label lh.white lh.cluster1.label.gii
The above is not working for me. I keep getting no errors or anything, just the usage in the terminal.
Thanks again! Tara
On Thu, Aug 7, 2014 at 12:51 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
p.s. oh, and lh.white is so that we have a surface. The label is just a (small) set of points on the surface, and doesn't contain other information needed to generate a surface (like connectivity)
On Thu, 7 Aug 2014, Tara Miskovich wrote:
Hi Doug thank you for the response. I just wasn't sure what was required
here. Specifically why we need to call on the white matter surface. And what the second V1 would be for. Thank you, Tara [cleardot.gif]
On Thu, Aug 7, 2014 at 11:05 AM, Tara Miskovich miskovi2@uwm.edu wrote: Hi all,
I could really use some help with this
I am trying to convert a group cluster to GIFTI (.gii) format. I just need some help running mris_convert.
The example for a label to GIFTI is
mris_convert --label lh.V1.label V1 lh.white lh.V1.label.gii
I'm trying to figure out what is required here. I understand I put in the label after label and the output at the end, but in this example I am not sure what the V1 and lh.white are for.
Thanks, Tara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
you are missing one argument (the name of the label). It should be:
mris_convert --label lh.cluster1.label NAME lh.white lh.cluster1.label.gii
On Thu, 7 Aug 2014, Tara Miskovich wrote:
Thank you for the help Bruce. I really appreciate it! So if we have a custom made label to we need to somehow add it to the FreeSurferColorLUT.txt. mris_convert --label lh.cluster1.label lh.white lh.cluster1.label.gii
The above is not working for me. I keep getting no errors or anything, just the usage in the terminal.
Thanks again! Tara
On Thu, Aug 7, 2014 at 12:51 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: p.s. oh, and lh.white is so that we have a surface. The label is just a (small) set of points on the surface, and doesn't contain other information needed to generate a surface (like connectivity) On Thu, 7 Aug 2014, Tara Miskovich wrote:
Hi Doug thank you for the response. I just wasn't sure what was required here. Specifically why we need to call on the white matter surface. And what the second V1 would be for. Thank you, Tara[cleardot.gif]
On Thu, Aug 7, 2014 at 11:05 AM, Tara Miskovich miskovi2@uwm.edu wrote: Hi all,
I could really use some help with this
I am trying to convert a group cluster to GIFTI (.gii) format. I just need some help running mris_convert.
The example for a label to GIFTI is
mris_convert --label lh.V1.label V1 lh.white lh.V1.label.gii
I'm trying to figure out what is required here. I understand I put in the label after label and the output at the end, but in this example I am not sure what the V1 and lh.white are for.
Thanks, Tara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
It worked! Thank you so much Bruce!
Tara
On Thu, Aug 7, 2014 at 1:59 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
you are missing one argument (the name of the label). It should be:
mris_convert --label lh.cluster1.label NAME lh.white lh.cluster1.label.gii
On Thu, 7 Aug 2014, Tara Miskovich wrote:
Thank you for the help Bruce. I really appreciate it! So if we have a
custom made label to we need to somehow add it to the FreeSurferColorLUT.txt. mris_convert --label lh.cluster1.label lh.white lh.cluster1.label.gii
The above is not working for me. I keep getting no errors or anything, just the usage in the terminal.
Thanks again! Tara
On Thu, Aug 7, 2014 at 12:51 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu
wrote: p.s. oh, and lh.white is so that we have a surface. The label is just a (small) set of points on the surface, and doesn't contain other information needed to generate a surface (like connectivity) On Thu, 7 Aug 2014, Tara Miskovich wrote:
Hi Doug thank you for the response. I just wasn't sure what was required here. Specifically why we need to call on the white matter surface. And what the second V1 would be for. Thank you, Tara[cleardot.gif]
On Thu, Aug 7, 2014 at 11:05 AM, Tara Miskovich miskovi2@uwm.edu wrote: Hi all,
I could really use some help with this
I am trying to convert a group cluster to GIFTI (.gii) format. I just need some help running mris_convert.
The example for a label to GIFTI is
mris_convert --label lh.V1.label V1 lh.white lh.V1.label.gii
I'm trying to figure out what is required here. I understand I put in the label after label and the output at the end, but in this example I am not sure what the V1 and lh.white are for.
Thanks, Tara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Tara Miskovich