If you don't have a .mat file, it will assume that it is in radiological order. You can bring it up in tkmedit to verify (it displays in radiological convention).

doug

ridatta@mail.med.upenn.edu wrote:

Hello All,

If my input images are in Analyze format in Radiologic convention, does FreeSurfer "know" that the MPRAGE images are in radiologic convention (right side of the brain on the left side of the image)? How do we confirm this?

Thanks

Rito _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer