Dear FreeSurfers,
I would like to know if there is a way to re-sample a NIFTI image (obtained after MRIcron conversion, from a dcm image) in Freesurfer with a scale factor of 2. I saw about mri_convert but this doesn't give me any option for the scale factor (for e.g. I want to drop each second slice from my NIFTI image)
Thank you. AK
Dear FreeSurfers,
This is a question I posted yesterday and I got not answer yet. I am trying to re-sample a NIFTI image (obtained after MRIcron conversion, from a dcm image) in Freesurfer with a scale factor of 2. I know about mri_convert with the option -rt but this doesn't give me any option for the scale factor (for e.g. I want to drop each second slice from my NIFTI image). Any suggestion will be greatly appreciated.
Thank you. AK _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Antonella,
this would be pretty easy to do in matlab I guess. Why do you want to do it? Do you really just want to drop every other slice? Do you want to change the in-plane resolution?
Bruce
On Fri, 7 Oct 2011, Antonella Kis wrote:
Dear FreeSurfers,
This is a question I posted yesterday and I got not answer yet. I am trying to re-sample a NIFTI image (obtained after MRIcron conversion, from a dcm image) in Freesurfer with a scale factor of 2. I know about mri_convert with the option -rt but this doesn't give me any option for the scale factor (for e.g. I want to drop each second slice from my NIFTI image). Any suggestion will be greatly appreciated.
Thank you. AK
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Antonella Kis -
Bruce Fischl