Yes, include the -T2pial flag

On 12/11/2018 12:06 PM, Maksimovskiy, Arkadiy wrote:

Dear Experts,

I am planning to run "recon" using T1 and T2 images, and was wondering if you wouldn't mind confirming whether this is the right command with recon:

recon-all -s ${subject} -i T1.nii -T2 T2.nii -all

I have seen a slightly different variation in the mailing archives, but this was years ago, and I believe that mine is consistent with the Wiki. Additionally, should the -T2pial flag be included?

Thank you for your help,

Arkadiy

-- Arkadiy L. Maksimovskiy, Ph.D. Postdoctoral Research Fellow McLean Imaging Center, McLean Hospital Department of Psychiatry, Harvard Medical School

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