Hello list!
Is there a way to display the thickness of individual Bordmann areas in the inflated surface using tksurfer?
I'm able to show surface area with File-> Label -> Load label and choosing the thresholded label. Now, I qould like to do the same but with cortical thickness, is this possible?
I'm using FS 5.0.
Thank you in advance, Andreia
Hi Andreia, do you mean that you want to display a constant value in each BA on the surface? We don't haveanything explicit to do that, but you could do it in matlab. Let me know if you need more info. doug
On 05/21/2013 11:46 AM, _andreia_@sapo.pt wrote:
Hello list!
Is there a way to display the thickness of individual Bordmann areas in the inflated surface using tksurfer?
I'm able to show surface area with File-> Label -> Load label and choosing the thresholded label. Now, I qould like to do the same but with cortical thickness, is this possible?
I'm using FS 5.0.
Thank you in advance, Andreia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug,
I would like to have the thickness map restricted to the BAs where the group differences showed up. Could it be possible to overlay the thickness map of an individual and then restrict it to the chosen BA, for example?
The ideia is to have two subjects with the thickness overlayed for display purposes.
If there would be a way to do this by groups it would also be nice!
Thank you! Andreia
Quoting Douglas N Greve greve@nmr.mgh.harvard.edu:
Hi Andreia, do you mean that you want to display a constant value in each BA on the surface? We don't haveanything explicit to do that, but you could do it in matlab. Let me know if you need more info. doug
On 05/21/2013 11:46 AM, _andreia_@sapo.pt wrote:
Hello list!
Is there a way to display the thickness of individual Bordmann areas in the inflated surface using tksurfer?
I'm able to show surface area with File-> Label -> Load label and choosing the thresholded label. Now, I qould like to do the same but with cortical thickness, is this possible?
I'm using FS 5.0.
Thank you in advance, Andreia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
You can create a binary mask from the labels (see mri_label2label with the --outmask option), then run mri_glmfit with the --mask option to only analyze data inside the mask. doug
On 05/21/2013 12:19 PM, _andreia_@sapo.pt wrote:
Hi Doug,
I would like to have the thickness map restricted to the BAs where the group differences showed up. Could it be possible to overlay the thickness map of an individual and then restrict it to the chosen BA, for example?
The ideia is to have two subjects with the thickness overlayed for display purposes.
If there would be a way to do this by groups it would also be nice!
Thank you! Andreia
Quoting Douglas N Greve greve@nmr.mgh.harvard.edu:
Hi Andreia, do you mean that you want to display a constant value in each BA on the surface? We don't haveanything explicit to do that, but you could do it in matlab. Let me know if you need more info. doug
On 05/21/2013 11:46 AM, _andreia_@sapo.pt wrote:
Hello list!
Is there a way to display the thickness of individual Bordmann areas in the inflated surface using tksurfer?
I'm able to show surface area with File-> Label -> Load label and choosing the thresholded label. Now, I qould like to do the same but with cortical thickness, is this possible?
I'm using FS 5.0.
Thank you in advance, Andreia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
_andreia_＠sapo.pt -
Douglas N Greve