Maybe to avoid problems with strange subdirs (like fsaverage), use

|asegstats2table --subjects ??? \ --segno 11 17 18 \ --tablefile aseg.vol.table|

if all subjects ids are three digits.

Best, Martin

On 01/22/2016 10:38 AM, Douglas Greve wrote:

It should take wild cards

On 1/21/16 8:16 PM, Luis Fernado Silva Castro de Araújo wrote:

...

Hi Freesurfer experts,

I wonder if there is a way of extracting the stats for all patients in my last run at the same time. I have around 120 observations and the asegstats2table syntax works in such a way that all the patients names should be listed:

|asegstats2table --subjects 004 021 040 067 080 092 \ --segno 11 17 18 \ --tablefile aseg.vol.table |

I hope I am wrong, but it seems that the —subjects argument does not accept substitution with wildcards, like |*| or |*.*|

Is there a way to make the command run the extraction of the statistics in all subjects within the $SUBJECTS_DIR in order to avoid typing all the 120 folder names? A bash script would do too.

Thanks,

luis

​

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer