Have you checked the talairach.xfm file? If not, visually inspect it using file->transforms->load transform for main volume to make sure it's right. You can always manually set it with mri_fill -cc <x> <y> <z>. See the FAQ.

cheers, Bruce

On Thu, 3 Mar 2005, Harshad Shanbhag wrote:

Hi all,

My earlier error was due to perl not properly configured. Thank you all for the help. However, on running

recon-all -stage1 -subjid TEST, I am now getting the error message mri_fill: could not find corpus callosum No such file or directory INFO: Modifying dst c_(r,a,s), using the transform dst ERROR: mri_fill exited with non-zero status

Please help me out.

Thank you, Harshad. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer