Try mri_binarize followed by mri_cor2label doug

On 05/20/2013 03:57 AM, zhang mingxia wrote:

Dear Freesurfer experts,

I analyzed functional data by spm and made a mask (analyze format). I have also run recon-all of structural data.

My question is: how to extract mean volume (from structural data) of the mask(from spm)?

I only extracted volume(or thickness) of ROI of a label edited by myself and annotation file. If I can convert analyze format to a label or annotation file, I can use that method. But how to convert analyze format to a label or annotation?

Or is there any easy way?

Thanks in advance!

Mingxia Zhang

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