Hi I have a problem with one of my recon. It failed with error. If I check the brain mask.mgz and T1.mgz images on Tkmedit, I can see that the brain mask is mislocated: it includes the cerebellum and the neck but not the real brain. I don't understand how I can fix it.
If someone can help me, I will really appreciate Thank you very much in advance for your answer Best regards Aurore
freesurfer@nmr.mgh.harvard.edu