Hello Freesurfer, I was wondering if anyone knows how to correct an underestimation of white matter and pial surface outputs from freesurfer. I attached an image showing the error. Thanks. Best, Paul
---------- Forwarded message ---------- From: miracle ozzoude miracooloz@gmail.com Date: Wed, Dec 28, 2016 at 2:53 PM Subject: under estimation of white matter and pial surface To: Douglas N Greve freesurfer@nmr.mgh.harvard.edu
Hello Freesurfer, I was wondering if anyone knows how to correct an underestimation of white matter and pial surface outputs from freesurfer. I attached an image showing the error. Thanks. Best, Paul
Hi Paul
it's hard to diagnose from one slice. If you upload the subject and send us voxel coords of this region we will take a look.
cheers Bruce On Wed, 28 Dec 2016, miracle ozzoude wrote:
Hello Freesurfer, I was wondering if anyone knows how to correct an underestimation of white matter and pial surface outputs from freesurfer. I attached an image showing the error. Thanks. Best, Paul
Thanks bruce. How do I upload the subject? Best, Paul
On Thu, Dec 29, 2016 at 1:28 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Paul
it's hard to diagnose from one slice. If you upload the subject and send us voxel coords of this region we will take a look.
cheers Bruce
On Wed, 28 Dec 2016, miracle ozzoude wrote:
Hello Freesurfer, I was wondering if anyone knows how to correct an
underestimation of white matter and pial surface outputs from freesurfer. I attached an image showing the error. Thanks. Best, Paul
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https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange On Thu, 29 Dec 2016, miracle ozzoude wrote:
Thanks bruce. How do I upload the subject?Best, Paul
On Thu, Dec 29, 2016 at 1:28 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Paul
it's hard to diagnose from one slice. If you upload the subject and send us voxel coords of this region we will take a look. cheers Bruce On Wed, 28 Dec 2016, miracle ozzoude wrote: Hello Freesurfer, I was wondering if anyone knows how to correct an underestimation of white matter and pial surface outputs from freesurfer. I attached an image showing the error. Thanks. Best, Paul
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
can I use Martinos center because I am not familiar with ftp? Thanks
On Thu, Dec 29, 2016 at 2:07 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
On Thu, 29 Dec 2016, miracle ozzoude wrote:
Thanks bruce. How do I upload the subject?Best,
Paul
On Thu, Dec 29, 2016 at 1:28 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu
wrote: Hi Paul
it's hard to diagnose from one slice. If you upload the subject and send us voxel coords of this region we will take a look. cheers Bruce On Wed, 28 Dec 2016, miracle ozzoude wrote: Hello Freesurfer, I was wondering if anyone knows how to correct an underestimation of white matter and pial surface outputs from freesurfer. I attached an image showing the error. Thanks. Best, Paul
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
I have sent it. Thanks Bruce. Best, Paul
On Thu, Dec 29, 2016 at 2:07 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
On Thu, 29 Dec 2016, miracle ozzoude wrote:
Thanks bruce. How do I upload the subject?Best,
Paul
On Thu, Dec 29, 2016 at 1:28 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu
wrote: Hi Paul
it's hard to diagnose from one slice. If you upload the subject and send us voxel coords of this region we will take a look. cheers Bruce On Wed, 28 Dec 2016, miracle ozzoude wrote: Hello Freesurfer, I was wondering if anyone knows how to correct an underestimation of white matter and pial surface outputs from freesurfer. I attached an image showing the error. Thanks. Best, Paul
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
miracle ozzoude