We are trying to rotate images in Analyze to align the midline. We have to do this by getting series from a PAX system to a PC with Analyze, rotating the images, sending back to PAX, and then transfering to a linux box with FreeSurfer. For some reason, FreeSurfer loads only a thin slice from the series as the volume. When loading the same volume in Slicer, the volume appears normal. Have you encountered this problem before? Thanks.
Ryan Haynes Radiology Research Assistant Children's Healthcare of Atlanta
no. can you run mri_info on the volume?
cheers, Bruce
On Fri, 1 Jul 2005 rhaynes@neuro.gatech.edu wrote:
We are trying to rotate images in Analyze to align the midline. We have to do this by getting series from a PAX system to a PC with Analyze, rotating the images, sending back to PAX, and then transfering to a linux box with FreeSurfer. For some reason, FreeSurfer loads only a thin slice from the series as the volume. When loading the same volume in Slicer, the volume appears normal. Have you encountered this problem before? Thanks.
Ryan Haynes Radiology Research Assistant Children's Healthcare of Atlanta
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
rhaynes＠neuro.gatech.edu