Dear Doug and All,
I want to register the individual subject surface into the fsaverage surface. I used mdi_surf2surf command. But one error occurred. Could you please help me with this. Here are the scripts:
—————————————————————————————————————————————————————————
[root@localhost sub001]# mri_surf2surf --hemi lh --srcsubject sub001 --srcsurfval thickness --src_type curv --trgsubject fsaverage --trgsurfval ./sub001-thickness-lh.img srcsubject = sub001 srcval = thickness srctype = curv trgsubject = fsaverage trgval = ./sub001-thickness-lh.img trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 Reading source surface reg /disk250/data_analysis/data_female_male_140/sub001/surf/lh.sphere.reg Loading source data Reading curvature file /disk250/data_analysis/data_female_male_140/sub001/surf/lh.thickness Reading target surface reg /disk250/data_analysis/data_female_male_140/fsaverage/surf/lh.sphere.reg Done Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (132230) Reverse Loop had 21224 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146822, nTrgMulti = 17020, MnTrgMultiHits = 2.247 nSrc121 = 93121, nSrcLost = 0, nSrcMulti = 39109, MnSrcMultiHits = 2.35099 Saving target data Saving to ./sub001-thickness-lh.img ANALYZE FORMAT ERROR: ncols 163842 in volume exceeds 32768 —————————————————————————————————————————————————————————————
Thank you very much!
Qiongmin
Hi Qiongmin
try making the output format .mgz (or maybe .nii) and see if that fixes the problem
cheers Bruce
On Tue, 13 May 2014, Caka wrote:
Dear Doug and All,
I want to register the individual subject surface into the fsaverage surface. I used mdi_surf2surf command. But one error occurred. Could you please help me with this. Here are the scripts:
—————————————————————————————————————————————————————————
[root@localhost sub001]# mri_surf2surf --hemi lh --srcsubject sub001 --srcsurfval thickness --src_type curv --trgsubject fsaverage --trgsurfval ./sub001-thickness-lh.img srcsubject = sub001 srcval = thickness srctype = curv trgsubject = fsaverage trgval = ./sub001-thickness-lh.img trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 Reading source surface reg /disk250/data_analysis/data_female_male_140/sub001/surf/lh.sphere.reg Loading source data Reading curvature file /disk250/data_analysis/data_female_male_140/sub001/surf/lh.thickness Reading target surface reg /disk250/data_analysis/data_female_male_140/fsaverage/surf/lh.sphere.reg Done Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (132230) Reverse Loop had 21224 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146822, nTrgMulti = 17020, MnTrgMultiHits = 2.247 nSrc121 = 93121, nSrcLost = 0, nSrcMulti = 39109, MnSrcMultiHits = 2.35099 Saving target data Saving to ./sub001-thickness-lh.img ANALYZE FORMAT ERROR: ncols 163842 in volume exceeds 32768 —————————————————————————————————————————————————————————————
Thank you very much!
Qiongmin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
You can't use analyze for this. mgh format will work. nii might work
On 05/13/2014 04:37 AM, Caka wrote:
Dear Doug and All,
I want to register the individual subject surface into the fsaverage surface. I used mdi_surf2surf command. But one error occurred. Could you please help me with this. Here are the scripts:
—————————————————————————————————————————————————————————
[root@localhost sub001]# mri_surf2surf --hemi lh --srcsubject sub001 --srcsurfval thickness --src_type curv --trgsubject fsaverage --trgsurfval ./sub001-thickness-lh.img srcsubject = sub001 srcval = thickness srctype = curv trgsubject = fsaverage trgval = ./sub001-thickness-lh.img trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 Reading source surface reg /disk250/data_analysis/data_female_male_140/sub001/surf/lh.sphere.reg Loading source data Reading curvature file /disk250/data_analysis/data_female_male_140/sub001/surf/lh.thickness Reading target surface reg /disk250/data_analysis/data_female_male_140/fsaverage/surf/lh.sphere.reg Done Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842)
surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (132230) Reverse Loop had 21224 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146822, nTrgMulti = 17020, MnTrgMultiHits = 2.247 nSrc121 = 93121, nSrcLost = 0, nSrcMulti = 39109, MnSrcMultiHits = 2.35099 Saving target data Saving to ./sub001-thickness-lh.img ANALYZE FORMAT ERROR: ncols 163842 in volume exceeds 32768 —————————————————————————————————————————————————————————————
Thank you very much!
Qiongmin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Caka -
Douglas N Greve