you can save individual labels by selecting the annotation unit you want and saving it, or you can do them all using mri_annotation2label.
The vertices should be identical across the various surfaces as they all have the same topology (except the *.nofix ones)
On Thu, 7 Dec 2006, Tao Song wrote:
Hi Bruce:
I have a question regarding the label file. How do I generate individual label files corresponding to differenct anatomical structure specified by .annot file? Currently, I can save them one by one in Tksurfer, after I load annotation, is there a convenient way to do that? Another question is: is the vertex index order in pial, smoothwm, and inflated surface identical? Thanks!
Tao
freesurfer@nmr.mgh.harvard.edu