Hi all, I’m trying to extend the pial surface to include missing GM. Part of the problem is that the wm.mgz seems to include the WM, but does not extend the border of the pial surface. I’ve attached links to pictures of the one of the scans. Any help would be greatly appreciated.
Noah
Without wm.mgz overlay: http://www.mediafire.com/view/9wsenfq2wdrtvcq/no_mwmask.png http://www.mediafire.com/view/9wsenfq2wdrtvcq/no_mwmask.png With mg.mgz overlay: http://www.mediafire.com/view/akdtms78iad5usu/with_wmmask.png http://www.mediafire.com/view/akdtms78iad5usu/with_wmmask.png
Hi Noah
it's impossible to tell from a single slice, but if you are talking about the right superior temporal gyrus I would guess that it is an incorrectly fixed topological defect. If you upload the subject to our ftp site we will take a look
cheers Bruce
On Mon, 31 Oct 2016, Noah Markowitz wrote:
Hi all, I’m trying to extend the pial surface to include missing GM. Part of the problem is that the wm.mgz seems to include the WM, but does not extend the border of the pial surface. I’ve attached links to pictures of the one of the scans. Any help would be greatly appreciated. Noah
Without wm.mgz overlay: http://www.mediafire.com/view/9wsenfq2wdrtvcq/no_mwmask.png With mg.mgz overlay: http://www.mediafire.com/view/akdtms78iad5usu/with_wmmask.png
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Noah Markowitz