Dear FreeSurfer experts,
I am trying to start mris_preproc, but unfortunately it doesn't find my created fsgd file. I saved it in the foulder where you can find all subjects data. Shall I save it somewhere else?
Thanks for your help,
best Marie
Hi Marie, you have to pass it as a command-line option with --fsgd doug
On 6/6/12 4:19 AM, Marie Schneider wrote:
Dear FreeSurfer experts,
I am trying to start mris_preproc, but unfortunately it doesn't find my created fsgd file. I saved it in the foulder where you can find all subjects data. Shall I save it somewhere else?
Thanks for your help,
best Marie
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I exactly tried that.
I typed:
mris_preproc --fsgd <fsgdfile> \ --cache in thickness.fwhm.10.fsaverage \ --target fsaverage \ --hemi lh \ --out <path>.mgh
everytime I am running this it says that my fsgd file cannot be found. So I wonder where I have to save it so that FreeSurfer can find it.
Thanks for any help
Marie
2012/6/6 Douglas Greve greve@nmr.mgh.harvard.edu
Hi Marie, you have to pass it as a command-line option with --fsgd doug
On 6/6/12 4:19 AM, Marie Schneider wrote:
Dear FreeSurfer experts,
I am trying to start mris_preproc, but unfortunately it doesn't find my created fsgd file. I saved it in the foulder where you can find all subjects data. Shall I save it somewhere else?
Thanks for your help,
best Marie
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Did you pass it the full path to the fsgd file, not just it's name? If so, please send the full command line. Also, run it with ---debug and send me the full terminal output. doug
On 6/7/12 9:39 AM, Marie Schneider wrote:
I exactly tried that.
I typed:
mris_preproc --fsgd <fsgdfile> \ --cache in thickness.fwhm.10.fsaverage \ --target fsaverage \ --hemi lh \ --out <path>.mgh
everytime I am running this it says that my fsgd file cannot be found. So I wonder where I have to save it so that FreeSurfer can find it.
Thanks for any help
Marie
2012/6/6 Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>
Hi Marie, you have to pass it as a command-line option with --fsgd doug On 6/6/12 4:19 AM, Marie Schneider wrote:Dear FreeSurfer experts, I am trying to start mris_preproc, but unfortunately it doesn't find my created fsgd file. I saved it in the foulder where you can find all subjects data. Shall I save it somewhere else? Thanks for your help, best Marie _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Douglas Greve -
Marie Schneider