Hi,
I installed freesurfer and followed all of the configuration steps. I am now doing the sample tests, and noticed that it can't find libjpeg.so.62. According to this resource:
https://surfer.nmr.mgh.harvard.edu/fswiki/Download
I should do the following:
cd /usr/lib (/usr/lib/i386 or /usr/lib/x86_64 on some Ubuntu distros) sudo ln -s libjpeg.so.8 libjpeg.so.62 sudo ln -s libtiff.so.4 libtiff.so.3?
After doing this is, it works, and I no longer get any errors. However, I am maintaining a cluster, and would prefer not doing this for every machine. Is there a place in the install directory or a parth/variable that I could modify to have it work without having to do the fix mentioned above?
Thanks, and have a nice day, Thomas Beaudry
On most (newer?) Ubuntu versions you can just type 'sudo apt-get install libjpeg62' and all the linking should be taken care of for you.
On 09/21/2016 11:29 AM, Thomas Beaudry wrote:
Hi,
I installed freesurfer and followed all of the configuration steps. I am now doing the sample tests, and noticed that it can't find libjpeg.so.62. According to this resource:
https://surfer.nmr.mgh.harvard.edu/fswiki/Download
I should do the following:
cd /usr/lib (/usr/lib/i386 or /usr/lib/x86_64 on some Ubuntu distros) sudo ln -s libjpeg.so.8 libjpeg.so.62 sudo ln -s libtiff.so.4 libtiff.so.3
After doing this is, it works, and I no longer get any errors. However, I am maintaining a cluster, and would prefer not doing this for every machine. Is there a place in the install directory or a parth/variable that I could modify to have it work without having to do the fix mentioned above?
Thanks, and have a nice day, Thomas Beaudry
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
OK great that works. Thanks ________________________________________ From: Z K zkaufman@nmr.mgh.harvard.edu Sent: Wednesday, September 21, 2016 11:37 AM To: freesurfer@nmr.mgh.harvard.edu; Thomas Beaudry Subject: Re: [Freesurfer] Configuration question for unbuntu
On most (newer?) Ubuntu versions you can just type 'sudo apt-get install libjpeg62' and all the linking should be taken care of for you.
On 09/21/2016 11:29 AM, Thomas Beaudry wrote:
Hi,
I installed freesurfer and followed all of the configuration steps. I am now doing the sample tests, and noticed that it can't find libjpeg.so.62. According to this resource:
https://surfer.nmr.mgh.harvard.edu/fswiki/Download
I should do the following:
cd /usr/lib (/usr/lib/i386 or /usr/lib/x86_64 on some Ubuntu distros) sudo ln -s libjpeg.so.8 libjpeg.so.62 sudo ln -s libtiff.so.4 libtiff.so.3
After doing this is, it works, and I no longer get any errors. However, I am maintaining a cluster, and would prefer not doing this for every machine. Is there a place in the install directory or a parth/variable that I could modify to have it work without having to do the fix mentioned above?
Thanks, and have a nice day, Thomas Beaudry
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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