External Email - Use Caution
Hello,
Forgive me, I'm new to FreeSurfer. I wish to collate values of white surface total area from all my subjects into a single table, so that I can control for this in my analyses. I understand this value is in the aparc.stats files for each participant and hemisphere, so I have tried:
aparcstats2table -subjectfile sublist -hemi lh -meas WhiteSurfArea -tablefile aparc_stats_lh.wsa.table
but WhiteSurfArea isn't an option for -meas. Please let me know if you can help,
Many thanks,
Emma Davies PhD Student
Department of Psychiatry University of Cambridge Douglas House 18b Trumpington Road Cambridge CB2 8AH
If you just run aparcstats2table it should be in the table. I don't think there is a way to only get that value
On 04/26/2018 11:20 AM, Sian Emma Davies wrote:
External Email - Use Caution
Hello,
Forgive me, I’m new to FreeSurfer. I wish to collate values of white surface total area from all my subjects into a single table, so that I can control for this in my analyses. I understand this value is in the aparc.stats files for each participant and hemisphere, so I have tried:
aparcstats2table –subjectfile sublist –hemi lh –meas WhiteSurfArea –tablefile aparc_stats_lh.wsa.table
but WhiteSurfArea isn’t an option for –meas. Please let me know if you can help,
Many thanks,
Emma Davies
PhD Student
Department of Psychiatry
University of Cambridge
Douglas House
18b Trumpington Road
Cambridge
CB2 8AH
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas N. Greve -
Sian Emma Davies