Sonya,

it looks like subject 1005 is missing its aseg.stat file for some reason. confirm that it completed its recon correctly, then run:

recon-all -s 1005 -segstats

which will create the stats files. then qdec should run properly. it should not be necessary to use the -skip flag (thats use only for very unusual cases of mixed parcellations).

n.

On Wed, 2012-04-04 at 13:21 -0500, sonya kaur wrote:

Hi Nick, Here's the error that I'm getting: asegstats2table --meas volume --tablefile /mnt/haley/Sonya/qdec/stats_tables/aseg.volume.stats.dat --subjects 1001 1002 1003 1004 1005 1006 1009 1010 1012 1013 1014 1015 1016 1017 1018 1020 1022 1023 1024 1025 1028 1029 1030 1031 1033 1034 1036 1037 1038 1039 1042 1045 1048 1050 1052 1054 1055 1056 1057 1058 1059 1061 1063 1066 1067 1070 1071 1072 1073 1074 1076 1079 1080 1082 1089 1098 1099 1100 1102 1103 1104 1106 1107 1108 1113 1115 1120 1121 1123 1124 1125 1127 1128 1129 1132 1133 1135 1136 1137 1138 1140 1144 1146 1147 1148 1151 Building the table.. SUBJECTS_DIR : /mnt/haley/Sonya ERROR: cannot find /mnt/haley/Sonya/1005/stats/aseg.stats Use --skip flag if you want to continue in such cases

[nsilab-07:/mnt/haley/Sonya] sk27829% ERROR: In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWTkUtilities.cxx, line 230 vtkKWQdecApp (0x6918ef0): Script: vtkTemp3 GenerateStatsDataTables Returned Error on line 1: Uncaught exception: command failed: asegstats2table --meas volume --tablefile /mnt/haley/Sonya/qdec/stats_tables/aseg.volume.stats.dat --subjects 1001 1002 1003 1004 1005 1006 1009 1010 1012 1013 1014 1015 1016 1017 1018 1020 1022 1023 1024 1025 1028 1029 1030 1031 1033 1034 1036 1037 1038 1039 1042 1045 1048 1050 1052 1054 1055 1056 1057 1058 1059 1061 1063 1066 1067 1070 1071 1072 1073 1074 1076 1079 1080 1082 1089 1098 1099 1100 1102 1103 1104 1106 1107 1108 1113 1115 1120 1121 1123 1124 1125 1127 1128 1129 1132 1133 1135 1136 1137 1138 1140 1144 1146 1147 1148 1151

Sonya

On Tue, Mar 27, 2012 at 11:26 PM, sonya kaur sonya.kaur21@gmail.com wrote: Hi everyone, I realize I'm quickly becoming an annoyance, but I'm having trouble loading my data file into qdec. I keep getting the error: QdecDataTable::Load failed to tokenize string: on line 88 of HTN_FMRI_Qdec. HTN_FMRI_Qdec is the name of my data file. I do not even have a line 88 as I have only 86 subjects and 4 variables.

    Thank you!
    Sonya
    -- 
    Sonya Kaur


    Clinical Psychology Graduate Student
    Department of Psychology
    The University of Texas, Austin
    1 University Station, A8000
    Austin, TX 78712
    SEA 4.110E

    sonya_kaur@mail.utexas.edu

-- Sonya Kaur

Clinical Psychology Graduate Student Department of Psychology The University of Texas, Austin 1 University Station, A8000 Austin, TX 78712 SEA 4.110E

sonya_kaur@mail.utexas.edu

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