Hi Everyone, I did the full install for 5.2 but got the following crash during Talairach:
#@# Talairach Failure Detection Mon Jan 7 13:43:33 EST 2013 /Applications/freesurfer/subjects/all_SP_mprage/SP037/mri \n talairach_afd -T 0.005 -xfm transforms/talairach.xfm \n talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.8143, pval=0.8469 >= threshold=0.0050) \n awk -f /Applications/freesurfer/bin/extract_talairach_avi_QA.awk /Applications/freesurfer/subjects/all_SP_mprage/SP037/mri/transforms/talairach_avi.log \n \n tal_QC_AZS /Applications/freesurfer/subjects/all_SP_mprage/SP037/mri/transforms/talairach_avi.log \n TalAviQA: 0.97598 z-score: 0 TalAviQA2: (standard_in) 1: parse error (standard_in) 1: parse error if: Expression Syntax.
Thanks for all your hard work,
Carl
Carl,
I see that is one of our Mac OS X builds (the toughest to get working), we'll try to replicate. Thanks for passing along the info.
Nick
On Mon, 2013-01-07 at 15:50 -0500, Carl Anderson wrote:
Hi Everyone, I did the full install for 5.2 but got the following crash during Talairach:
#@# Talairach Failure Detection Mon Jan 7 13:43:33 EST 2013 /Applications/freesurfer/subjects/all_SP_mprage/SP037/mri \n talairach_afd -T 0.005 -xfm transforms/talairach.xfm \n talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.8143, pval=0.8469 >= threshold=0.0050) \n awk -f /Applications/freesurfer/bin/extract_talairach_avi_QA.awk /Applications/freesurfer/subjects/all_SP_mprage/SP037/mri/transforms/talairach_avi.log \n \n tal_QC_AZS /Applications/freesurfer/subjects/all_SP_mprage/SP037/mri/transforms/talairach_avi.log \n TalAviQA: 0.97598 z-score: 0 TalAviQA2: (standard_in) 1: parse error (standard_in) 1: parse error if: Expression Syntax.
Thanks for all your hard work,
Carl
-- <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>> Carl M. Anderson, Ph.D. (mail stop 204) Assistant Professor of Psychiatry, Harvard Medical School & The Neuroimaging Center, McLean Hospital 115 Mill St. Belmont, MA 02478 Ph: 617-855-2972; Fax: 617-855-2770 e-mail: remfract@gmail.com; carl_anderson@hms.harvard.edu <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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