Dear FreeSurfer experts,
I'm sorry but I have another problem..now when I load a surface (freeview -v OAS2_0001_MR1.long.OAS2_0001/mri/norm.mgz)Freeview starts but i can't see the image and only when I change for example values in opacity or window, the image appears but immediately disappears. I forgot to say that i'm using ubuntu 11.10 64 bit. (FreeSurfer v5.1.0 on ubuntu 11.10
on a notebook ASUS i3-350M, 4GB RAM and ATI Mobility RadeonHD 5470 1GB RAM DDR3)
Thanks
Best regards Carlo Cotugno
Hi Carlo
that command line loads a volume, not a surface. Do you load the surface from the interface? You can do it from the command line with -f <surface name>. Not sure about your problem, but we'll need more details about what you did
cheers Bruce
On Fri, 13 Apr 2012, carlo cotugno wrote:
Dear FreeSurfer experts,
I'm sorry but I have another problem..now when I load a surface (freeview -v OAS2_0001_MR1.long.OAS2_0001/mri/norm.mgz)Freeview starts but i can't see t he image and only when I change for example values in opacity or window, th e image appears but immediately disappears. I forgot to say that i'm using u buntu 11.10 64 bit. (FreeSurfer v5.1.0 on ubuntu 11.10
on a notebook ASUS i3-350M, 4GB RAM and ATI Mobility RadeonHD 5470 1GB RAM D DR3)
Thanks Best regards Carlo Cotugno
Does this happen with every volume you load or just that specific one? What happens if you change slices? Are you viewing it in the 3D view?
Ruopeng
On 4/13/12 3:34 AM, carlo cotugno wrote:
Dear FreeSurfer experts,
I'm sorry but I have another problem..now when I load a surface (freeview -v OAS2_0001_MR1.long.OAS2_0001/mri/norm.mgz)Freeview starts but i can't see the image and only when I change for example values in opacity or window, the image appears but immediately disappears. I forgot to say that i'm using ubuntu 11.10 64 bit. (FreeSurfer v5.1.0 on ubuntu 11.10 on a notebook ASUS i3-350M, 4GB RAM and ATI Mobility RadeonHD 5470 1GB RAM DDR3)Thanks Best regards Carlo Cotugno
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I'm a newbie with FreSurfer and Linux. I'm following Longitudinal Processing-Tutorial. now I have only files of tutorial data set and I don't have any other file to test. I can run Freeview and I can load volume from terminal and from interface, but when I try to load surfaces (from terminal with correct command -f OAS2.... or from interface of Freeview) I have the same result: Freeview interface crashes and in the terminal I find: MatrixMultiply: m2 is null! No such file or directory.
I tried also with other surfaces and I had the same result. F http://www.wordreference.com/enit/furthermoreurthermore when I installed long-tutorial in $FREESURFER_HOME/subjects directory the directory long-tutorial was with another owner and I had to change owner with command "chown -R", or I couldn't use it. I tried also to remove the directory and reinstall long-tutorial but the problem of owner still remains and I had to run "chown -R" in order to have access to the directory and its files. I followed instructions to the letter but now I don't really know how to fix it.
sorry for my english thanks
Would it be possible to send us the surface file that crashes freeview?
Ruopeng
On 4/13/12 10:06 AM, carlo cotugno wrote:
I'm a newbie with FreSurfer and Linux. I'm following Longitudinal Processing-Tutorial. now I have only files of tutorial data set and I don't have any other file to test. I can run Freeview and I can load volume from terminal and from interface, but when I try to load surfaces (from terminal with correct command -f OAS2.... or from interface of Freeview) I have the same result: Freeview interface crashes and in the terminal I find: MatrixMultiply: m2 is null! No such file or directory.
I tried also with other surfaces and I had the same result. F http://www.wordreference.com/enit/furthermoreurthermore when I installed long-tutorial in $FREESURFER_HOME/subjects directory the directory long-tutorial was with another owner and I had to change owner with command "chown -R", or I couldn't use it. I tried also to remove the directory and reinstall long-tutorial but the problem of owner still remains and I had to run "chown -R" in order to have access to the directory and its files. I followed instructions to the letter but now I don't really know how to fix it.
sorry for my english thanks
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu