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Hi Freesurfers, I would like to generate a label that extends some distance from a chosen vertex on the surface. Is this possible in the freeview gui? Otherwise?
Many thanks for you feedback.
Best, Jason
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Hi Jason
There are morphological tools built into freeview, so you could select a single vertex, make a label from it, then dilate it as many times as you want. That will of course give you the graph distance not the actual surface geodesic, but might be good enough?
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Jason Tourville Sent: Wednesday, August 23, 2023 12:27 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] surface label generation from vertex?
External Email - Use Caution Hi Freesurfers, I would like to generate a label that extends some distance from a chosen vertex on the surface. Is this possible in the freeview gui? Otherwise?
Many thanks for you feedback.
Best, Jason
External Email - Use Caution
You can also use mri_binarize, like mri_binarize --dilate-vertex vno lh.white radius out.mgz where radius is the radius in mm. This will start with your seed vertex, then keep adding vertices in a ring until the desired area (pi*r^2) is hit
On 8/23/2023 12:57 PM, Fischl, Bruce R.,PHD wrote:
External Email - Use Caution
Hi Jason
There are morphological tools built into freeview, so you could select a single vertex, make a label from it, then dilate it as many times as you want. That will of course give you the graph distance not the actual surface geodesic, but might be good enough?
Cheers
Bruce
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu *On Behalf Of *Jason Tourville *Sent:* Wednesday, August 23, 2023 12:27 PM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] surface label generation from vertex?
* External Email - Use Caution *
Hi Freesurfers,
I would like to generate a label that extends some distance from a chosen vertex on the surface. Is this possible in the freeview gui? Otherwise?
Many thanks for you feedback.
Best,
Jason
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