Hi Folks
In my dataset each MRI exam is 256*256*180. I would like to convert wmparc.mgz back to 256*256*180. Since this is the segmentation output, I think I should use set the resample type to nearest and use a command like
mri_convert -rl mri/orig/001.mgz -rt nearest mri/wmparc.mgz mri/wmparc.nii
Does this look correct or is there anything else I need to specify? Thanks Mehul
That looks correct to me.
Peace,
Matt.
_____
From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Mehul Sampat Sent: Thursday, November 05, 2009 3:38 PM To: Freesurfer Mailing List Subject: [Freesurfer] reslicing question
Hi Folks
In my dataset each MRI exam is 256*256*180. I would like to convert wmparc.mgz back to 256*256*180. Since this is the segmentation output, I think I should use set the resample type to nearest and use a command like
mri_convert -rl mri/orig/001.mgz -rt nearest mri/wmparc.mgz mri/wmparc.nii
Does this look correct or is there anything else I need to specify? Thanks Mehul
that looks right to me On Thu, 5 Nov 2009, Mehul Sampat wrote:
Hi Folks
In my dataset each MRI exam is 256*256*180. I would like to convert wmparc.mgz back to 256*256*180. Since this is the segmentation output, I think I should use set the resample type to nearest and use a command like
mri_convert -rl mri/orig/001.mgz -rt nearest mri/wmparc.mgz mri/wmparc.nii
Does this look correct or is there anything else I need to specify? Thanks Mehul
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Matt Glasser -
Mehul Sampat