Dear Experts,
I ran a group analysis in Qdec for the left volume and found a region of significant group difference. I wanted to extract this ROI. I defined this label and used the "map label to subjects" option in Qdec and ran the following but encountered the following error. Please kindly help...
[spjwker@nanlnx2 FSL]1% mris_anatomical_stats -l lh.HCA_vol.label -b -f PAC07/stats/lh.HCA_vol.stats PAC07 lh limiting computations to label lh.HCA_vol.label. reading volume /home/spjwker_PAC/Lena/CT_SA/FSL/PAC07/mri/wm.mgz... reading input surface /home/spjwker_PAC/Lena/CT_SA/FSL/PAC07/surf/lh.white... reading input pial surface /home/spjwker_PAC/Lena/CT_SA/FSL/PAC07/surf/lh.pial... reading input white surface /home/spjwker_PAC/Lena/CT_SA/FSL/PAC07/surf/lh.white... Segmentation fault
Many thanks,
Lena
I can't replicate. Try loading the white and pial surfaces into freeview. If that works, please upload your subject so I can try to replicate the error
On 12/08/2015 11:22 AM, Lim, Lena wrote:
Dear Experts,
I ran a group analysis in Qdec for the left volume and found a region of significant group difference. I wanted to extract this ROI. I defined this label and used the “map label to subjects” option in Qdec and ran the following but encountered the following error. Please kindly help…
[spjwker@nanlnx2 FSL]1% mris_anatomical_stats –l lh.HCA_vol.label -b -f PAC07/stats/lh.HCA_vol.stats PAC07 lh
limiting computations to label lh.HCA_vol.label.
reading volume /home/spjwker_PAC/Lena/CT_SA/FSL/PAC07/mri/wm.mgz...
reading input surface /home/spjwker_PAC/Lena/CT_SA/FSL/PAC07/surf/lh.white...
reading input pial surface /home/spjwker_PAC/Lena/CT_SA/FSL/PAC07/surf/lh.pial...
reading input white surface /home/spjwker_PAC/Lena/CT_SA/FSL/PAC07/surf/lh.white...
Segmentation fault
Many thanks,
Lena
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Lim, Lena