Do you have access to the stderr output from this process?

On 1/3/19 3:55 PM, Maksimovskiy, Arkadiy wrote:

Dear Experts,

I was wondering if someone might be able to help diagnose a recon error.

I used the following command to initiate recon:

recon-all -subject RMD002 -i /ncf/anl/anl01/MultiMode/Data/structural/T1_MEMPRAGE_5_RMD002_e1.nii -T2 /ncf/anl/anl01/MultiMode/Data/structural/T2_SPACE_6_RMD002.nii -T2pial -3T -all

The recon log indicates an error: recon-all -s RMD002 exited with ERRORS

Attached is the log file. I used grep to search through it for “failed” or “error”, but am unable to see any indices of errors, other than this message at the bottom of the log.

I would love to hear any info for what might have gone wrong.

Thank you for all your help,

Arkadiy

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