Dear FreeSurfer group,
I am having problems with a subject with very large ventricles. The recon-all exits with errors.
Is it known issue that FreeSurfer is having difficulties with large ventricles?
How can i solve this problem?
I have read in another post, that the flag -bigventricles may solve the problem?
Best regards, Kasper
Hi Kasper
you might try downloading dev and see if it works. The upcoming (but never quite ready) V6 should have much better handling of enlarged ventricles.
cheers Bruce On Tue, 10 May 2016, Kasper Jessen wrote:
Dear FreeSurfer group, I am having problems with a subject with very large ventricles. The recon-all exits with errors. Is it known issue that FreeSurfer is having difficulties with large ventricles?
How can i solve this problem?
I have read in another post, that the flag -bigventricles may solve the problem?
Best regards, Kasper
Hi Bruce,
Do i just download the following
Development Version
To install the Development version of FreeSurfer, download the appropriate dev build.
on https://surfer.nmr.mgh.harvard.edu/fswiki/Download and install it?
Best, Kasper
2016-05-10 14:32 GMT+02:00 Bruce Fischl fischl@nmr.mgh.harvard.edu:
Hi Kasper
you might try downloading dev and see if it works. The upcoming (but never quite ready) V6 should have much better handling of enlarged ventricles.
cheers Bruce
On Tue, 10 May 2016, Kasper Jessen wrote:
Dear FreeSurfer group,
I am having problems with a subject with very large ventricles. The recon-all exits with errors.
Is it known issue that FreeSurfer is having difficulties with large ventricles?
How can i solve this problem?
I have read in another post, that the flag -bigventricles may solve the problem?
Best regards, Kasper
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yes, if you want to try it out. You'll need to replace it with V6 when it is out
On Tue, 17 May 2016, Kasper Jessen wrote:
Hi Bruce, Do i just download the following
Development Version To install the Development version of FreeSurfer, download the appropriate dev build.on https://surfer.nmr.mgh.harvard.edu/fswiki/Download and install it?
Best, Kasper
2016-05-10 14:32 GMT+02:00 Bruce Fischl fischl@nmr.mgh.harvard.edu: Hi Kasper
you might try downloading dev and see if it works. The upcoming (but never quite ready) V6 should have much better handling of enlarged ventricles. cheers Bruce On Tue, 10 May 2016, Kasper Jessen wrote: Dear FreeSurfer group, I am having problems with a subject with very large ventricles. The recon-all exits with errors. Is it known issue that FreeSurfer is having difficulties with large ventricles? How can i solve this problem? I have read in another post, that the flag -bigventricles may solve the problem? Best regards, Kasper
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
-- Kasper Jessen, MD, PhD student Center for neuropsychiatric Schizophrenia Research (CNSR) Mental Health Centre Glostrup Nordre Ringvej 29-67 2600 Glostrup Tlf.: 24430136 E-mail: kasper_j@cnsr.dk eller kasper.jessen@regionh.dk
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