Dear All,
I am new to freesurfer and I was wondering if you could give me some advice.
I run the freesurfer analysis on the anatomical scan of one subject and I noticed that in output files from wm.asegedit.mgz onwards, large part of the brain (frontal lobes) appears to be missing. I checked the previous output file (wm.seg.mgz) and seems to be fine, so there must be a problem when creating wm.asegedit.mgz.
Many thanks,
Aspa
The University of Aberdeen is a charity registered in Scotland, No SC013683.
Can you send us the dataset?
On Sep 16, 2009, at 12:18 PM, "Paltoglou, Aspasia E" <aspa.paltoglou@abdn.ac.uk
wrote:
Dear All,
I am new to freesurfer and I was wondering if you could give me some advice.
I run the freesurfer analysis on the anatomical scan of one subject and I noticed that in output files from wm.asegedit.mgz onwards, large part of the brain (frontal lobes) appears to be missing. I checked the previous output file (wm.seg.mgz) and seems to be fine, so there must be a problem when creating wm.asegedit.mgz.
Many thanks,
Aspa
The University of Aberdeen is a charity registered in Scotland, No SC013683.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Check the skull stripping. This can cause the FS-specific talairach alignment to fail.
Paltoglou, Aspasia E wrote:
Dear All,
I am new to freesurfer and I was wondering if you could give me some advice.
I run the freesurfer analysis on the anatomical scan of one subject and I noticed that in output files from wm.asegedit.mgz onwards, large part of the brain (frontal lobes) appears to be missing. I checked the previous output file (wm.seg.mgz) and seems to be fine, so there must be a problem when creating wm.asegedit.mgz.
Many thanks,
Aspa
The University of Aberdeen is a charity registered in Scotland, No SC013683.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu