Hi again,
I am experiencing some problems when testing my freesurfer installation in Ubuntu 9.04. When I run tkmedit and tkmsurfer the interface opens OK, but the volume display window behave in a weird manner in both cases: it appears but quickly disappears. In tkmedit, if I click on some of the buttons to choose a view (for instance, axial), the volume window appears but it disappears if I move the cursor out of the selected button. Is this problem familiar to anyone?
Thanks in advance for any help! Miguel
Hi Miguel,
make sure your video driver is up to date. Are there any error messages in the console? Bruce On Wed, 13 Jan 2010, Miguel Burgaleta wrote:
Hi again,
I am experiencing some problems when testing my freesurfer installation in Ubuntu 9.04. When I run tkmedit and tkmsurfer the interface opens OK, but the volume display window behave in a weird manner in both cases: it appears but quickly disappears. In tkmedit, if I click on some of the buttons to choose a view (for instance, axial), the volume window appears but it disappears if I move the cursor out of the selected button. Is this problem familiar to anyone?
Thanks in advance for any help! Miguel
Hi Miguel,
As Bruce said, the best thing to do is to make sure you have enabled "Hardware Drivers" for your video card and make sure they are up-to-date. However, if you do not have a video card with the appropriate level of OpenGL support for an application (e.g., if you are running in a VM), I have been able to run tkmedit using the mesa SW X11 implementation in Ubuntu 9.04. You can install it with:
sudo apt-get install libgl1-mesa-swx11
Good luck!
-- Dan
On Jan 13, 2010, at 7:47 AM, Bruce Fischl wrote:
Hi Miguel,
make sure your video driver is up to date. Are there any error messages in the console? Bruce On Wed, 13 Jan 2010, Miguel Burgaleta wrote:
Hi again,
I am experiencing some problems when testing my freesurfer installation in Ubuntu 9.04. When I run tkmedit and tkmsurfer the interface opens OK, but the volume display window behave in a weird manner in both cases: it appears but quickly disappears. In tkmedit, if I click on some of the buttons to choose a view (for instance, axial), the volume window appears but it disappears if I move the cursor out of the selected button. Is this problem familiar to anyone?
Thanks in advance for any help! Miguel
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks Bruce + Daniel.
I get no error messages in the terminal when running tkmedit/tkmsurfer.
Drivers are enabled and up-to-date, and other similar software is working OK (for instance, fslview). However, I have installed freesurfer in another computer with an nvidia video card and tkmedit looks great. In this one I have an ATI Radeon HD 4670 (maybe a conflictive card, as far as I have read...)
I tried mesa SW X11 and we could say I got an improvement: now the display window doesn't disappear but it is kind of transparent (I more or less see the 'whites' of the volume but those areas supposed to be black or dark grey are actually transparent --it looks pretty cool but not very useful to work with ;). Any other installation that could help? Is there anyone else experiencing this kind of problem with ATI cards?
Thanks again! Miguel
On Wed, Jan 13, 2010 at 5:16 PM, Ginsburg, Daniel < Daniel.Ginsburg@childrens.harvard.edu> wrote:
Hi Miguel,
As Bruce said, the best thing to do is to make sure you have enabled "Hardware Drivers" for your video card and make sure they are up-to-date. However, if you do not have a video card with the appropriate level of OpenGL support for an application (e.g., if you are running in a VM), I have been able to run tkmedit using the mesa SW X11 implementation in Ubuntu 9.04. You can install it with:
sudo apt-get install libgl1-mesa-swx11
Good luck!
-- Dan
On Jan 13, 2010, at 7:47 AM, Bruce Fischl wrote:
Hi Miguel,
make sure your video driver is up to date. Are there any error messages in the console? Bruce On Wed, 13 Jan 2010, Miguel Burgaleta wrote:
Hi again,
I am experiencing some problems when testing my freesurfer installation
in
Ubuntu 9.04. When I run tkmedit and tkmsurfer the interface opens OK,
but
the volume display window behave in a weird manner in both cases: it
appears
but quickly disappears. In tkmedit, if I click on some of the buttons to choose a view (for instance, axial), the volume window appears but it disappears if I move the cursor out of the selected button. Is this
problem
familiar to anyone?
Thanks in advance for any help! Miguel
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Ginsburg, Daniel -
Miguel Burgaleta