ERROR | License file for FS 7.1 - Freesurfer

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Otília C. d'Almeida

11 Sep 2020 11 Sep '20

8:17 a.m.

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Hi,

I'm struggling to use tkmedit with FreeSurfer 7.1.

For example, trying: tkmedit SUBJECT brainmask.mgz -surfs

The error message I got is:

------

GNU libc version:2.19

ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file (it's free). Please download a new one from the following page: ..../registration.html

------

All the registration steps were performed, and a license.txt file was sent. This file was copied to $FREESURFER_HOME. The problem remains. Anyone had the same issue? How did you solve it?

Also, here https://surfer.nmr.mgh.harvard.edu/fswiki/LinuxInstall it is said that the license.txt file have 3 lines. The info sent have more since the e-mail is also included. What is the format of the license file?

Thank you!

with kind regards,

Otília

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Tim Schäfer

11 Sep 11 Sep

8:28 a.m.

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As far as I know, in FS7, the file needs to be named '.license', while FS6 expected it to be 'license.txt'.

Just copy it to the new name. Note that it may not be visible afterwards, since the dot makes it a hidden file. You can see it with:

ls -a $FREESURFER_HOME/.license

after you copied it. Depending on the installation location, you may need to copy with sudo/ as root.

Best,

Tim

...

On 09/11/2020 2:17 PM Otília C. d'Almeida oalmeida@fmed.uc.pt wrote:

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Hi,

I'm struggling to use tkmedit with FreeSurfer 7.1.

For example, trying: tkmedit SUBJECT brainmask.mgz -surfs

The error message I got is:

GNU libc version:2.19

ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file (it's free). Please download a new one from the following page: ..../registration.html

All the registration steps were performed, and a license.txt file was sent. This file was copied to $FREESURFER_HOME. The problem remains. Anyone had the same issue? How did you solve it?

Also, here https://surfer.nmr.mgh.harvard.edu/fswiki/LinuxInstall it is said that the license.txt file have 3 lines. The info sent have more since the e-mail is also included. What is the format of the license file?

Thank you!

with kind regards,

Otília

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany

Fischl, Bruce

10:43 a.m.

Hi Otília tkmedit has been deprecated for a long time. Can you try freeview instead?

Cheers Bruce From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Otília C. d'Almeida Sent: Friday, September 11, 2020 8:17 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] ERROR | License file for FS 7.1

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Hi,

I'm struggling to use tkmedit with FreeSurfer 7.1.

For example, trying: tkmedit SUBJECT brainmask.mgz -surfs

The error message I got is:

------

GNU libc version:2.19

ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file (it's free). Please download a new one from the following page: ..../registration.html

------

All the registration steps were performed, and a license.txt file was sent. This file was copied to $FREESURFER_HOME. The problem remains. Anyone had the same issue? How did you solve it?

Thank you!

with kind regards,

Otília

Otília C. d'Almeida

10:56 a.m.

External Email - Use Caution

Hi Tim and Bruce,

thanks for your quick responses! The license is now working.

Regarding tkmedit...I noticed right away after trying. I used to do verifications and manual edits in tkmedit, but yes, I'll check the documentation on edits in freeview and adapt to it.

Thank you for your help!

Best regards,

Otília

A 2020-09-11 15:43, Fischl, Bruce escreveu:

...

Hi Otília

tkmedit has been deprecated for a long time. Can you try freeview instead?

Cheers

Bruce

FROM: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu ON BEHALF OF Otília C. d'Almeida SENT: Friday, September 11, 2020 8:17 AM TO: freesurfer@nmr.mgh.harvard.edu SUBJECT: [Freesurfer] ERROR | License file for FS 7.1

EXTERNAL EMAIL - USE CAUTION

Hi,

I'm struggling to use tkmedit with FreeSurfer 7.1.

For example, trying: tkmedit SUBJECT brainmask.mgz -surfs

The error message I got is:

GNU libc version:2.19

ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file (it's free). Please download a new one from the following page: ..../registration.html

All the registration steps were performed, and a license.txt file was sent. This file was copied to $FREESURFER_HOME. The problem remains. Anyone had the same issue? How did you solve it?

Also, here https://surfer.nmr.mgh.harvard.edu/fswiki/LinuxInstall it is said that the license.txt file have 3 lines. The info sent have more since the e-mail is also included. What is the format of the license file?

Thank you!

with kind regards,

Otília

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Douglas N. Greve

15 Sep 15 Sep

10 a.m.

You can also use tkmeditfv, which will take most of the tkmedit command line opts but then run freeview

On 9/11/2020 10:56 AM, Otília C. d'Almeida wrote:

...

External Email - Use Caution

Hi Tim and Bruce,

thanks for your quick responses! The license is now working.

Regarding tkmedit...I noticed right away after trying. I used to do verifications and manual edits in tkmedit, but yes, I'll check the documentation on edits in freeview and adapt to it.

Thank you for your help!

Best regards,

Otília

A 2020-09-11 15:43, Fischl, Bruce escreveu:

...
Hi Otília

tkmedit has been deprecated for a long time. Can you try freeview instead?

Cheers

Bruce

*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu *On Behalf Of *Otília C. d'Almeida *Sent:* Friday, September 11, 2020 8:17 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] ERROR | License file for FS 7.1

* External Email - Use Caution *

Hi,

I'm struggling to use tkmedit with FreeSurfer 7.1.

For example, trying: tkmedit SUBJECT brainmask.mgz -surfs

The error message I got is:

GNU libc version:2.19

ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file (it's free). Please download a new one from the following page: ..../registration.html

All the registration steps were performed, and a license.txt file was sent. This file was copied to $FREESURFER_HOME. The problem remains. Anyone had the same issue? How did you solve it?

Also, here https://surfer.nmr.mgh.harvard.edu/fswiki/LinuxInstall%C2%A0it is said that the license.txt file have 3 lines. The info sent have more since the e-mail is also included. What is the format of the license file?

Thank you!

with kind regards,

Otília

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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Douglas N. Greve
Fischl, Bruce
Otília C. d'Almeida
Tim Schäfer