20 GB is not a lot for a full macos install + data, how much room was free before you ran recon-all? What is the hardware? CPU, RAM etc.

hth d

On Wed, Mar 9, 2016 at 12:09 PM, Gronenschild Ed (NP) ed.gronenschild@maastrichtuniversity.nl wrote:

Hi developers,

Could you please help me out on this problem. Should I upload the data?

Cheers, Ed

Begin forwarded message:

From: Ed Gronenschild ed.gronenschild@maastrichtuniversity.nl Subject: System crash by extremely much generated output v6 beta Date: 7 March 2016 12:57:57 CET To: freesurfer@nmr.mgh.harvard.edu

Hi developers,

My environment: MacPro OSX10.7 installed on a partition of 20 GByte; FreeSurfer v6 beta

During processing recon-all on 4 subjects in parallel using 4 terminal windows, the 20 GByte partition got full. This happened twice and I managed to trace down the offending stage in the pipeline: topology fixing, in particular the tool mris_topo_fixer. Most probably it went into an endless iteration loop generating so much output the disk got full.

Cheers, Ed

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