Re: [Freesurfer] Help - Freesurfer

29 Nov 2021

      Can you send them in plain, unzipped format?
On 11/29/2021 4:07 AM, Nilab Nasrullah wrote:
...
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I am attaching a few screenshots of the segmented brain as zip-files. 
Hopefully, you can see the results. If not, let me know so I can send 
it to you in a different format.
Thanks,
Nilab

*From:* freesurfer-bounces@nmr.mgh.harvard.edu 
freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve 
dgreve@MGH.HARVARD.EDU
*Sent:* 29 November 2021 04:01
*To:* freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] Help
Can you send some pictures?
On 11/23/2021 4:02 AM, Nilab Nasrullah wrote:
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Hi,
I am editing subjects for a research project. After reconstruction, 
some parts of the brain are not included in the segmentation. Often, 
some parts of the temporal lobe and the cortex of the occipital lobe 
are not included. In some cases, the cortex of the frontal lobe is 
also affected.
I have tried using controls points, but the results don't change. I 
have also reconstructed them again, running autorecon1 and 
autorecon2&3 separately. I have lowered the watershed parameters, 
used the gcut command and edited manually after autorecon1 but in the 
end, the results don't vary significantly compared to running 
recon-all -all.
What can I do to include the missing parts?
Thanks,
Nilab
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