Hi All,
I'm sure this information is on the website somewhere, but I had a hard time finding it. Is there a way to consolidate 2 or more labels into one annotation? I am attempting to load two cluster labels onto the difference map in qdec for the purposes of making a figure, but I cannot load more than one label at once, and the cluster annotation includes labels which I do not want to display. Thanks!
Nathan
use mris_label2annot, like this:
set cmd=(mris_label2annot \ --s $s \ --hemi $h \ --ctab $SUBJECTS_DIR/scripts/colortable.txt \ --l $h.oasis.chubs.ifc.label \ --l $h.oasis.chubs.ipc.label \ --a oasis.chubs)
you'll need to create your own colortable, for example:
0 unknown 25 5 25 0 1 oasis.chubs.ifc 25 100 40 0 2 oasis.chubs.ipc 125 100 160 0
you must have 'unknown' in there to label all the other unlabeled vertices.
n.
On Wed, 2010-03-31 at 15:29 -0400, Dankner, Nathan (NIH/NIMH) [F] wrote:
Hi All,
I'm sure this information is on the website somewhere, but I had a hard time finding it. Is there a way to consolidate 2 or more labels into one annotation? I am attempting to load two cluster labels onto the difference map in qdec for the purposes of making a figure, but I cannot load more than one label at once, and the cluster annotation includes labels which I do not want to display. Thanks!
Nathan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
you can do this "manually" in tksurfer using the custom-fill tool. Not sure if there is any commandline way to do it. Bruce On Wed, 31 Mar 2010, Dankner, Nathan (NIH/NIMH) [F] wrote:
Hi All,
I'm sure this information is on the website somewhere, but I had a hard time finding it. Is there a way to consolidate 2 or more labels into one annotation? I am attempting to load two cluster labels onto the difference map in qdec for the purposes of making a figure, but I cannot load more than one label at once, and the cluster annotation includes labels which I do not want to display. Thanks!
Nathan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu