Dear all,
I have some T1 images which are originally in coronal view and the in-plane resolution is 0.5x0.5mm and slice thickness is 2mm. The matrix size is 512x512. I need to segment the left and right hemisphers. As the head is tilted I also need to register the images. Which atlas you recommend to use for this case ? Does MIN152_T1_0.5mm work better or MIN152_T1_2mm ?
Thank you, Mahmoud
is this the only T1-weighted image you have, or do you also have something more isotropic?
On Mon, 3 Nov 2014, Mahmoud wrote:
Dear all,
I have some T1 images which are originally in coronal view and the in-plane resolution is 0.5x0.5mm and slice thickness is 2mm. The matrix size is 512x512. I need to segment the left and right hemisphers. As the head is tilted I also need to register the images. Which atlas you recommend to use for this case ? Does MIN152_T1_0.5mm work better or MIN152_T1_2mm ?
Thank you, Mahmoud
Dear Bruce,
Unfortunately, this is the only thing I have.
Mahmoud
On Mon, Nov 3, 2014 at 2:44 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
is this the only T1-weighted image you have, or do you also have something more isotropic?
On Mon, 3 Nov 2014, Mahmoud wrote:
Dear all,
I have some T1 images which are originally in coronal view and the in-plane resolution is 0.5x0.5mm and slice thickness is 2mm. The matrix size is 512x512. I need to segment the left and right hemisphers. As the head is tilted I also need to register the images. Which atlas you recommend to use for this case ? Does MIN152_T1_0.5mm work better or MIN152_T1_2mm ?
Thank you, Mahmoud
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I see. You can try running it through recon-all, but the 2mm is at the edge of what will work On Mon, 3 Nov 2014, Mahmoud wrote:
Dear Bruce, Unfortunately, this is the only thing I have.
Mahmoud
On Mon, Nov 3, 2014 at 2:44 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: is this the only T1-weighted image you have, or do you also have something more isotropic?
On Mon, 3 Nov 2014, Mahmoud wrote: Dear all, I have some T1 images which are originally in coronal view and the in-plane resolution is 0.5x0.5mm and slice thickness is 2mm. The matrix size is 512x512. I need to segment the left and right hemisphers. As the head is tilted I also need to register the images. Which atlas you recommend to use for this case ? Does MIN152_T1_0.5mm work better or MIN152_T1_2mm ? Thank you, Mahmoud
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Mahmoud