Hi:
How can I get the volumetry of the corpus callosum in only some sagital slices ?... For example, 5 slices to the left and 5 to the right the medial line ?...
Sincerely,
Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica Las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl
mri_cc takes a '-t <thickness>' parameter, which is 2 by default (meaning the cc goes out 2 slices in either direction from the midline). Run it with -t 5 and it should do what you want
On Fri, 19 Mar 2010, Gonzalo Rojas wrote:
Hi:
How can I get the volumetry of the corpus callosum in only some sagital slices ?... For example, 5 slices to the left and 5 to the right the medial line ?...
Sincerely,
Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica Las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Bruce:
I test the command "mri_cc -aseg aseg.mgz -o test.mgz -t 5 patient", but I get the message "mri_cc: volume /usr/local/freesurfer/subjects/patient/mri/aseg.mgz already has CC in it"...
How can get the volumetry of corpus callosum in 5 sagital sliced for example ?...
Sincerely,
Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Las Condes Clinic Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl
El 19-03-2010 12:59, Bruce Fischl escribió:
mri_cc takes a '-t <thickness>' parameter, which is 2 by default (meaning the cc goes out 2 slices in either direction from the midline). Run it with -t 5 and it should do what you want
On Fri, 19 Mar 2010, Gonzalo Rojas wrote:
Hi:
How can I get the volumetry of the corpus callosum in only some sagital slices ?... For example, 5 slices to the left and 5 to the right the medial line ?...
Sincerely,
Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica Las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
try using the aseg.auto_noCCseg.mgz as input
On Thu, 27 May 2010, Gonzalo Rojas wrote:
Hi Bruce:
I test the command "mri_cc -aseg aseg.mgz -o test.mgz -t 5 patient", but I get the message "mri_cc: volume /usr/local/freesurfer/subjects/patient/mri/aseg.mgz already has CC in it"...
How can get the volumetry of corpus callosum in 5 sagital sliced for example ?...
Sincerely,
Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Las Condes Clinic Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl
El 19-03-2010 12:59, Bruce Fischl escribió:
mri_cc takes a '-t <thickness>' parameter, which is 2 by default (meaning the cc goes out 2 slices in either direction from the midline). Run it with -t 5 and it should do what you want
On Fri, 19 Mar 2010, Gonzalo Rojas wrote:
Hi:
How can I get the volumetry of the corpus callosum in only some sagital slices ?... For example, 5 slices to the left and 5 to the right the medial line ?...
Sincerely,
Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica Las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Gonzalo Rojas