Dear Freesurfers,
Is the attached file an example of pial surface extending into cerebellum?
Thank you very much!
Sincerely, Ye
Dear Freesurfers,
My first attempt of this message didn't get through. Sorry for those who are receiving it for the second time.
Basically, I think that the pial surface in the blue circle is extending into cerebellum. I need a second vote on my decision to manual edit.
Thank you very much!
Sincerely, Ye
On Mon, Jul 8, 2013 at 11:33 AM, ye tian tianye730@gmail.com wrote:
Dear Freesurfers,
Is the attached file an example of pial surface extending into cerebellum?
Thank you very much!
Sincerely, Ye
Ye,
Since no one's replied, I'll say it does look like the cb is infringing on the pial surface. It's easier to tell the boundary toward the center of the brain than it is toward the lower portion. It's easier to tell, in my opinion, in the coronal view. Toggling the surface off may help as well.
jon
On Mon, Jul 8, 2013 at 4:04 PM, ye tian tianye730@gmail.com wrote:
Dear Freesurfers,
My first attempt of this message didn't get through. Sorry for those who are receiving it for the second time.
Basically, I think that the pial surface in the blue circle is extending into cerebellum. I need a second vote on my decision to manual edit.
Thank you very much!
Sincerely, Ye
On Mon, Jul 8, 2013 at 11:33 AM, ye tian tianye730@gmail.com wrote:
Dear Freesurfers,
Is the attached file an example of pial surface extending into cerebellum?
Thank you very much!
Sincerely, Ye
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Dear Jonathan,
Thank you very much for your response.
This actually brings me to my second question. What is the criteria for manual editing? Do you only edit when the problem appears in all three views? Or do you start editing when there seems to be a problem in only one view? Would you personally edit in my case (where the horizontal and sagittal views look okay)?
Thank you very much!
PS: I didn't see my first message in the mailing archive, so I thought it didn't go through. It seems that an email with images will only show in the archive until it solicits a response. Sorry to bother you guys.
Sincerely, Ye
On Tue, Jul 9, 2013 at 9:22 AM, Jonathan Holt whatsdac@umich.edu wrote:
Ye,
Since no one's replied, I'll say it does look like the cb is infringing on the pial surface. It's easier to tell the boundary toward the center of the brain than it is toward the lower portion. It's easier to tell, in my opinion, in the coronal view. Toggling the surface off may help as well.
jon
On Mon, Jul 8, 2013 at 4:04 PM, ye tian tianye730@gmail.com wrote:
Dear Freesurfers,
My first attempt of this message didn't get through. Sorry for those who are receiving it for the second time.
Basically, I think that the pial surface in the blue circle is extending into cerebellum. I need a second vote on my decision to manual edit.
Thank you very much!
Sincerely, Ye
On Mon, Jul 8, 2013 at 11:33 AM, ye tian tianye730@gmail.com wrote:
Dear Freesurfers,
Is the attached file an example of pial surface extending into cerebellum?
Thank you very much!
Sincerely, Ye
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Ye,
personally I edit once I see an issue in any view, and I continue to look for problems in all 3 views. In those images it seems like the issue with the cb is less drastic this time around. Is it the same area? In any case I would make minor edits in the images you provided, very minor. The images are a bit small so I may be seeing incorrectly... Really it's up to you, just edit consistently.
jon
On Tue, Jul 9, 2013 at 11:16 AM, ye tian tianye730@gmail.com wrote:
Dear Jonathan,
Thank you very much for your response.
This actually brings me to my second question. What is the criteria for manual editing? Do you only edit when the problem appears in all three views? Or do you start editing when there seems to be a problem in only one view? Would you personally edit in my case (where the horizontal and sagittal views look okay)?
Thank you very much!
PS: I didn't see my first message in the mailing archive, so I thought it didn't go through. It seems that an email with images will only show in the archive until it solicits a response. Sorry to bother you guys.
Sincerely, Ye
On Tue, Jul 9, 2013 at 9:22 AM, Jonathan Holt whatsdac@umich.edu wrote:
Ye,
Since no one's replied, I'll say it does look like the cb is infringing on the pial surface. It's easier to tell the boundary toward the center of the brain than it is toward the lower portion. It's easier to tell, in my opinion, in the coronal view. Toggling the surface off may help as well.
jon
On Mon, Jul 8, 2013 at 4:04 PM, ye tian tianye730@gmail.com wrote:
Dear Freesurfers,
My first attempt of this message didn't get through. Sorry for those who are receiving it for the second time.
Basically, I think that the pial surface in the blue circle is extending into cerebellum. I need a second vote on my decision to manual edit.
Thank you very much!
Sincerely, Ye
On Mon, Jul 8, 2013 at 11:33 AM, ye tian tianye730@gmail.com wrote:
Dear Freesurfers,
Is the attached file an example of pial surface extending into cerebellum?
Thank you very much!
Sincerely, Ye
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Dear Jon,
Thank you very much!
Yes, it is the same area. I set the cursor in one place and clicked the C, H and C buttons in tkmedit tools.
Sincerely, Ye
On Tue, Jul 9, 2013 at 10:20 AM, Jonathan Holt whatsdac@umich.edu wrote:
Ye,
personally I edit once I see an issue in any view, and I continue to look for problems in all 3 views. In those images it seems like the issue with the cb is less drastic this time around. Is it the same area? In any case I would make minor edits in the images you provided, very minor. The images are a bit small so I may be seeing incorrectly... Really it's up to you, just edit consistently.
jon
On Tue, Jul 9, 2013 at 11:16 AM, ye tian tianye730@gmail.com wrote:
Dear Jonathan,
Thank you very much for your response.
This actually brings me to my second question. What is the criteria for manual editing? Do you only edit when the problem appears in all three views? Or do you start editing when there seems to be a problem in only one view? Would you personally edit in my case (where the horizontal and sagittal views look okay)?
Thank you very much!
PS: I didn't see my first message in the mailing archive, so I thought it didn't go through. It seems that an email with images will only show in the archive until it solicits a response. Sorry to bother you guys.
Sincerely, Ye
On Tue, Jul 9, 2013 at 9:22 AM, Jonathan Holt whatsdac@umich.edu wrote:
Ye,
Since no one's replied, I'll say it does look like the cb is infringing on the pial surface. It's easier to tell the boundary toward the center of the brain than it is toward the lower portion. It's easier to tell, in my opinion, in the coronal view. Toggling the surface off may help as well.
jon
On Mon, Jul 8, 2013 at 4:04 PM, ye tian tianye730@gmail.com wrote:
Dear Freesurfers,
My first attempt of this message didn't get through. Sorry for those who are receiving it for the second time.
Basically, I think that the pial surface in the blue circle is extending into cerebellum. I need a second vote on my decision to manual edit.
Thank you very much!
Sincerely, Ye
On Mon, Jul 8, 2013 at 11:33 AM, ye tian tianye730@gmail.com wrote:
Dear Freesurfers,
Is the attached file an example of pial surface extending into cerebellum?
Thank you very much!
Sincerely, Ye
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Jonathan Holt -
ye tian