i havent used mnc2nii. you can use mri_convert:

mri_convert filename.mnc filename.nii

(or filename.nii.gz to gzip it)

n.

On Tue, 2011-01-25 at 21:51 -0500, Alexander Zaitsev wrote:

Hello: When I am trying to convert mnc file into nifti, the mnc2nii converter gives me an error $FREESURFER_HOME/mni/bin/mnc2nii fileName.mnc fileName.nii "Can't find input file fileName.mnc"

Prepending a whole path to the file name does not help - same error message

I am using FreeSurver 5.0.0 (MAC/Darwin/i686) build

Any suggestions?

Thank you, Alex Zaitsev _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer