wyang,

the recon-all stream will produce a file named aseg.mgz for your subject that contains the segmented hippocampus (and 30+ other structures). you can learn about freesurfer via the tutorials:

http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial

Nick

On Mon, 2009-06-22 at 14:43 -0400, Wenlu Yang wrote:

Hi all,

I want to use freesurfer to segment hippocampus from MR images, but I don't know how to do it because I am a newcomer here. could you give me some advices? thanks.

wyang _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer