Dear FreeSurfers,
I have overlaid group data on the fsaverage brain, and find that when I type Talairach coordinates into tkmedit (e.g., 9.90 -36.64 -14.15), the cursor jumps to a nearby but different location (e.g., 9.8 -36.1 -10.1). Any ideas what could be causing this trouble?
Thanks!
Dan Dillon
Hi Dan,
this looks like a bug. We'll look into it and get back to you (feel free to ping me about it in a week or so if you haven't heard anything)
Bruce On Mon, 3 Mar 2008, Dan Dillon wrote:
Dear FreeSurfers,
I have overlaid group data on the fsaverage brain, and find that when I type Talairach coordinates into tkmedit (e.g., 9.90 -36.64 -14.15), the cursor jumps to a nearby but different location (e.g., 9.8 -36.1 -10.1). Any ideas what could be causing this trouble?
Thanks!
Dan Dillon
What do you mean that type Tal coords into tkmedit?
Dan Dillon wrote:
Dear FreeSurfers,
I have overlaid group data on the fsaverage brain, and find that when I type Talairach coordinates into tkmedit (e.g., 9.90 -36.64 -14.15), the cursor jumps to a nearby but different location (e.g., 9.8 -36.1 -10.1). Any ideas what could be causing this trouble?
Thanks!
Dan Dillon
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Into the "tkmedit tools", the second window under "Cursor" . . . I have a sig map overlaid and am checking the output of mri_volcluster by typing the coordinates in and verifying significance values . . . when I the coordinates of a cluster in, the cursor jumps to a nearby position and the Talairach coordinates change slightly from what I entered.
-----Original Message----- From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Monday, March 03, 2008 3:24 PM To: Dan Dillon Cc: 'Freesurfer Mailing List' Subject: Re: [Freesurfer] Odd tkmedit behavior
What do you mean that type Tal coords into tkmedit?
Dan Dillon wrote:
Dear FreeSurfers,
I have overlaid group data on the fsaverage brain, and find that when I type Talairach coordinates into tkmedit (e.g., 9.90 -36.64 -14.15), the cursor jumps to a nearby but different location (e.g., 9.8 -36.1 -10.1). Any ideas what could be causing this trouble?
Thanks!
Dan Dillon
_____
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
We're tracking it down, but it appears to be in the bowels of our TCL code, so it could be a while.
Dan Dillon wrote:
Into the "tkmedit tools", the second window under "Cursor" . . . I have a sig map overlaid and am checking the output of mri_volcluster by typing the coordinates in and verifying significance values . . . when I the coordinates of a cluster in, the cursor jumps to a nearby position and the Talairach coordinates change slightly from what I entered.
-----Original Message----- From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Monday, March 03, 2008 3:24 PM To: Dan Dillon Cc: 'Freesurfer Mailing List' Subject: Re: [Freesurfer] Odd tkmedit behavior
What do you mean that type Tal coords into tkmedit?
Dan Dillon wrote:
Dear FreeSurfers,
I have overlaid group data on the fsaverage brain, and find that when I type Talairach coordinates into tkmedit (e.g., 9.90 -36.64 -14.15), the cursor jumps to a nearby but different location (e.g., 9.8 -36.1 -10.1). Any ideas what could be causing this trouble?
Thanks!
Dan Dillon
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Okay, sounds good-thanks.
DD
-----Original Message----- From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Monday, March 03, 2008 3:44 PM To: Dan Dillon Cc: 'Freesurfer Mailing List' Subject: Re: [Freesurfer] Odd tkmedit behavior
We're tracking it down, but it appears to be in the bowels of our TCL code, so it could be a while.
Dan Dillon wrote:
Into the "tkmedit tools", the second window under "Cursor" . . . I have a sig map overlaid and am checking the output of mri_volcluster by typing the coordinates in and verifying significance values . . . when I the coordinates of a cluster in, the cursor jumps to a nearby position and the Talairach coordinates change slightly from what I entered.
-----Original Message----- From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Monday, March 03, 2008 3:24 PM To: Dan Dillon Cc: 'Freesurfer Mailing List' Subject: Re: [Freesurfer] Odd tkmedit behavior
What do you mean that type Tal coords into tkmedit?
Dan Dillon wrote:
Dear FreeSurfers,
I have overlaid group data on the fsaverage brain, and find that when I type Talairach coordinates into tkmedit (e.g., 9.90 -36.64 -14.15), the cursor jumps to a nearby but different location (e.g., 9.8 -36.1 -10.1). Any ideas what could be causing this trouble?
Thanks!
Dan Dillon
_____
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Dan,
I just showed Doug :)
Bruce On Mon, 3 Mar 2008, Dan Dillon wrote:
Into the "tkmedit tools", the second window under "Cursor" . . . I have a sig map overlaid and am checking the output of mri_volcluster by typing the coordinates in and verifying significance values . . . when I the coordinates of a cluster in, the cursor jumps to a nearby position and the Talairach coordinates change slightly from what I entered.
-----Original Message----- From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Monday, March 03, 2008 3:24 PM To: Dan Dillon Cc: 'Freesurfer Mailing List' Subject: Re: [Freesurfer] Odd tkmedit behavior
What do you mean that type Tal coords into tkmedit?
Dan Dillon wrote:
Dear FreeSurfers,
I have overlaid group data on the fsaverage brain, and find that when I type Talairach coordinates into tkmedit (e.g., 9.90 -36.64 -14.15), the cursor jumps to a nearby but different location (e.g., 9.8 -36.1 -10.1). Any ideas what could be causing this trouble?
Thanks!
Dan Dillon
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Dan,
I managed to track this down and fix it. Note that the cursor will move a bit to the center of the voxel with that tal coord, but not much. The fix will be in the next stable release (soon), or you can get a dev version from Nick.
cheers, Bruce On Mon, 3 Mar 2008, Dan Dillon wrote:
Dear FreeSurfers,
I have overlaid group data on the fsaverage brain, and find that when I type Talairach coordinates into tkmedit (e.g., 9.90 -36.64 -14.15), the cursor jumps to a nearby but different location (e.g., 9.8 -36.1 -10.1). Any ideas what could be causing this trouble?
Thanks!
Dan Dillon
Thanks Bruce!
DD
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Tuesday, March 04, 2008 10:54 AM To: Dan Dillon Cc: 'Freesurfer Mailing List' Subject: Re: [Freesurfer] Odd tkmedit behavior
Hi Dan,
I managed to track this down and fix it. Note that the cursor will move a bit to the center of the voxel with that tal coord, but not much. The fix will be in the next stable release (soon), or you can get a dev version from Nick.
cheers, Bruce On Mon, 3 Mar 2008, Dan Dillon wrote:
Dear FreeSurfers,
I have overlaid group data on the fsaverage brain, and find that when I
type
Talairach coordinates into tkmedit (e.g., 9.90 -36.64 -14.15), the
cursor
jumps to a nearby but different location (e.g., 9.8 -36.1 -10.1). Any
ideas
what could be causing this trouble?
Thanks!
Dan Dillon
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu