Hi, I'm running fsv405 on RHEL5. I received the following message and reviewed the input images, but could not spot the problem. Any suggestions about where I should be looking in the T1.mgz?
Many Thanks, Jenifer
White matter intensity 0 is lower than CSF intensity 14. Please examine input images. Will terminate ... *********************************************** *********************************************** ***********************************************
********************************************************** MRIstripSkull failed. ************************************************************
is the white matter in the T1.mgz close to 110? On Wed, 3 Sep 2008, Juranek, Jenifer wrote:
Hi, I'm running fsv405 on RHEL5. I received the following message and reviewed the input images, but could not spot the problem. Any suggestions about where I should be looking in the T1.mgz?
Many Thanks, Jenifer
White matter intensity 0 is lower than CSF intensity 14. Please examine input images. Will terminate ...
MRIstripSkull failed.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Yes, in the T1.mgz, the WM is around 110 in the slices I sampled across the ant-post extent of the brain.
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Wednesday, September 03, 2008 11:41 AM To: Juranek, Jenifer Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] WM intensity < CSF intensity?
is the white matter in the T1.mgz close to 110? On Wed, 3 Sep 2008, Juranek, Jenifer wrote:
Hi, I'm running fsv405 on RHEL5. I received the following message and
reviewed the input images, but could not spot the problem. Any suggestions about where I should be looking in the T1.mgz?
Many Thanks, Jenifer
White matter intensity 0 is lower than CSF intensity 14. Please examine input images. Will terminate ...
MRIstripSkull failed.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
hmmm, do you want to send it to us and we'll take a look? On Wed, 3 Sep 2008, Juranek, Jenifer wrote:
Yes, in the T1.mgz, the WM is around 110 in the slices I sampled across the ant-post extent of the brain.
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Wednesday, September 03, 2008 11:41 AM To: Juranek, Jenifer Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] WM intensity < CSF intensity?
is the white matter in the T1.mgz close to 110? On Wed, 3 Sep 2008, Juranek, Jenifer wrote:
Hi, I'm running fsv405 on RHEL5. I received the following message and
reviewed the input images, but could not spot the problem. Any suggestions about where I should be looking in the T1.mgz?
Many Thanks, Jenifer
White matter intensity 0 is lower than CSF intensity 14. Please examine input images. Will terminate ...
MRIstripSkull failed.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks, Bruce. The file upload to your server just finished.
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Wednesday, September 03, 2008 12:34 PM To: Juranek, Jenifer Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] WM intensity < CSF intensity?
hmmm, do you want to send it to us and we'll take a look? On Wed, 3 Sep 2008, Juranek, Jenifer wrote:
Yes, in the T1.mgz, the WM is around 110 in the slices I sampled
across
the ant-post extent of the brain.
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Wednesday, September 03, 2008 11:41 AM To: Juranek, Jenifer Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] WM intensity < CSF intensity?
is the white matter in the T1.mgz close to 110? On Wed, 3 Sep 2008, Juranek, Jenifer wrote:
Hi, I'm running fsv405 on RHEL5. I received the following message and
reviewed the input images, but could not spot the problem. Any suggestions about where I should be looking in the T1.mgz?
Many Thanks, Jenifer
White matter intensity 0 is lower than CSF intensity 14. Please examine input images. Will terminate ...
MRIstripSkull failed.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Juranek, Jenifer